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Table 5 Top 20 most significant GO terms found associated with miR156 targets in the rice transcriptome.

From: Employing machine learning for reliable miRNA target identification in plants

Rank Cellular component Molecular Function Biological function
  Go Terms Significance (P-value) Go Terms Significance (P-value) Go Terms Significance (P-value)
1 cell wall 2.20e-16 RNA binding 2.20e-16 cellular protein metabolic process 2.20e-16
2 cytosolic large ribosomal subunit 2.20e-16 copper ion binding 2.20e-16 DNA replication 2.20e-16
3 ribosome 2.20e-16 aspartic-type endopeptidase activity 2.20e-16 response to cadmium ion 2.20e-16
4 ribonucleoprotein complex 2.20e-16 aspartate kinase activity 2.20e-16 DNA integration 2.20e-16
5 mitochondrial inner membrane 2.20e-16 DNA-directed DNA polymerase activity 2.20e-16 translation 2.20e-16
6 Golgi apparatus 2.20e-16 zinc ion binding 2.20e-16 cellular amino acid biosynthetic process 2.20e-16
7 cytosolic small ribosomal subunit 2.20e-16 ubiquitin thiolesterase activity 2.20e-16 microtubule-based movement 2.20e-16
8 nuclear pore 2.20e-16 microtubule motor activity 2.20e-16 cellular amino acid metabolic process 2.20e-16
9 mitochondrion 2.20e-16 triose-phosphate isomerase activity 2.20e-16 intracellular protein transport 2.20e-16
10 cytoplasm 2.20e-16 branched-chain-amino-acid transaminase activity 2.20e-16 protein import into nucleus, docking 2.20e-16
11 cytosol 2.20e-16 structural constituent of ribosome 2.20e-16 shoot development 2.20e-16
12 cytoskeleton 2.20e-16 nucleic acid binding 2.20e-16 proteolysis 2.20e-16
13 cytosolic ribosome 2.20e-16 translation initiation factor activity 2.20e-16 branched chain family amino acid metabolic process 2.20e-16
14 nucleolus 2.20e-16 DNA binding 2.20e-16 ubiquitin-dependent protein catabolic process 2.956e-16
15 plasma membrane 5.21E-015 glyceraldehyde-3-phosphate dehydrogenase activity 2.20e-16 embryo development ending in seed dormancy 1.114e-15
16 proteasome complex 1.09e-14 NAD binding 4.27E-015 vesicle-mediated transport 3.006e-15
17 COPI vesicle coat 1.20e-13 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity 1.649e-14 rRNA processing 1.756e-14
18 outer membrane 1.39e-12 ligase activity 1.96e-14 translational elongation 2.675e-14
19 protein complex 1.43e-15 unfolded protein binding 2.25E-014 protein folding 4.47E-014
20 small ribosomal subunit 3.20e-12 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.67e-14 response to hormone stimulus 1.870e-13
  1. The top scoring 20 terms associated with three GO categories are given with their associated significance scores (p-value).