From: Ancient Pbx-Hox signatures define hundreds of vertebrate developmental enhancers
Motif | CONDOR CNEs (from[57]) | Human:Shark CNEs (from 13] | VISTA EB (all)[43] | VISTA EB set HB/BA/CN+ve (from[43]) | VISTA EB set HB +ve (from[43]) | Zebrafish CBset all[21] | Zebrafish CB set HB +ve (from[21]) |
---|---|---|---|---|---|---|---|
TGATNNATKR | 562 | 666 | 609 | 161 | 131 | 17 | 7 |
TGTANNATKR | 171 | 188 | 388 | 65 | 52 | 12 | 3 |
GTATNNATKR | 150 | 168 | 279 | 54 | 39 | 9 | 2 |
GTTANNATKR | 150 | 178 | 325 | 79 | 65 | 8 | 2 |
TTGANNATKR | 200 | 245 | 447 | 80 | 64 | 9 | 1 |
TTAGNNATKR | 167 | 238 | 398 | 74 | 55 | 7 | 0 |
ATGTNNATKR | 259 | 297 | 452 | 86 | 72 | 20 | 1 |
ATTGNNATKR | 233 | 297 | 436 | 74 | 61 | 20 | 2 |
AGTTNNATKR | 215 | 254 | 431 | 85 | 68 | 9 | 0 |
TAGTNNATKR | 147 | 154 | 297 | 54 | 42 | 10 | 4 |
TATGNNATKR | 176 | 198 | 365 | 74 | 60 | 10 | 3 |
GATTNNATKR | 274 | 315 | 419 | 97 | 74 | 11 | 0 |
TGATNNTAKR | 106 | 143 | 314 | 65 | 50 | 6 | 1 |
TGTANNTAKR | 142 | 151 | 421 | 82 | 60 | 14 | 1 |
GTATNNTAKR | 59 | 73 | 195 | 41 | 34 | 1 | 0 |
GTTANNTAKR | 105 | 108 | 253 | 50 | 33 | 5 | 0 |
TTGANNTAKR | 162 | 205 | 385 | 72 | 62 | 10 | 0 |
TTAGNNTAKR | 73 | 97 | 235 | 41 | 31 | 0 | 0 |
ATGTNNTAKR | 103 | 124 | 376 | 64 | 55 | 3 | 0 |
ATTGNNTAKR | 136 | 158 | 305 | 57 | 42 | 6 | 1 |
AGTTNNTAKR | 85 | 121 | 320 | 64 | 50 | 5 | 1 |
TAGTNNTAKR | 66 | 69 | 198 | 37 | 27 | 1 | 0 |
TATGNNTAKR | 84 | 94 | 345 | 80 | 62 | 5 | 1 |
GATTNNTAKR | 144 | 177 | 292 | 58 | 42 | 2 | 0 |
mean | 165.38 | 196.58 | 353.54 | 70.58 | 55.46 | 8.33 | 1.25 |
S.D | 102.75 | 122.06 | 93.73 | 24.74 | 20.92 | 5.52 | 1.67 |
z-score for pbxhox | 3.86 | 3.84 | 2.72 | 3.65 | 3.61 | 1.57 | 3.43 |
p-value | 5.68E-05 | 6.16E-05 | 3.30E-03 | 1.00E-04 | 2.00E-04 | N/S | 3.00E-04 |