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Table 1 Alignment of CHO short reads to mouse and rat reference genomes

From: Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology

Sequence Type

Mouse

Rat

Total aligned

6,582,209

(8.71%)

6,281,589

(8.31%)

Aligned to unique regions

3,202,228

(4.47%)

3,046,308

(4.28%)

Aligned to repeat regions

3,379,981

(4.24%)

3,235,281

(4.03%)

Aligned to protein-coding genes*

2,678,662

(3.52%)

2,359,457

(3.12%)

  1. * Pseudogenes, RNA genes, and genes on Y chromosome were excluded from this analysis. Genes include exons, introns, and 5'- and 3'-untranslated regions
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BMC Genomics

ISSN: 1471-2164

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