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Table 1 Alignment of CHO short reads to mouse and rat reference genomes

From: Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology

Sequence Type Mouse Rat
Total aligned 6,582,209 (8.71%) 6,281,589 (8.31%)
Aligned to unique regions 3,202,228 (4.47%) 3,046,308 (4.28%)
Aligned to repeat regions 3,379,981 (4.24%) 3,235,281 (4.03%)
Aligned to protein-coding genes* 2,678,662 (3.52%) 2,359,457 (3.12%)
  1. * Pseudogenes, RNA genes, and genes on Y chromosome were excluded from this analysis. Genes include exons, introns, and 5'- and 3'-untranslated regions