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Table 3 MLST sequence variants by genome.

From: Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates

 

Sequence Variant

 

Strain

abcZ

adk

efp

fumC

glyBETA (RS)

mutY

ppa

trpE

Sequence Type

12P80B1*

50

25

12

3

37

52

3

2

185

103P14B1*

8

26

2

3

2

22

41

2

187

ATCC 43617*

3

3

3

4

18

3

3

2

25

46P47B1*

3

20

2

7

62

15

8

2

186

7169

3

18

3

4

3

9

3

2

82

BC1

25

18

3

4

6

9

3

2

NP-ST

BC7

8

18

12

3

29

3

3

2

NP-ST

BC8

2

2

12

7

20

6

3

2

162

CO72

8

8

2

3

2

3

9

2

199

101P30B1

8

26

2

3

2

3

25

2

NP-ST

035E

2

NP-SV

2

NP-SV

57

22

8

2

NP-ST

RH4*

8

30

2

7

32

3

3

2

128

  1. Unless previously determined (*), the eight genes used for the M. catarrhalis MLST typing scheme were identified within each genome and used to query the MLST database for the corresponding sequence variant number [13, 16]. The sequence number combinations were then used to identify the sequence type, where NP-ST and NP-SV denote sequence types and sequence variants not present in the MLST database at the time of analysis, respectively.
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BMC Genomics

ISSN: 1471-2164

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