Characterization of the past and current duplication activities in the human 22q11.2 region

BMC Genomics

Table 3 A total of 28 CNVs derived from alignment of clones to 22q11.2 (see Figure 7B, C for illustration)

ID	CNV start	CNV End	Length (bp)	Gain/Loss	IDs of the Corresponding Clones	Breakpoint Feature (one for gain, but left-right for loss)
1	17101986	17101986	269	Gain	AC007981	AT_rich
2	17101994	17101994	367	Gain	AC023491	AT_rich
3	17117298	17117298	216	Gain	AC023491	Na
4	17213332	17213332	1467	Gain	AC007981	AluY/AluSg
5	18443137	18443137	849	Gain	AC005664	AluY
6	21045602	21045602	6065	Gain	AC217064	L1PB1
7	21082588	21082588	9100	Gain	AC009286	L2
8	21208336	21208336	11915	Gain	AC209546	AluY
9	21317338	21317338	322	Gain	AC012331	AluSg
10	22384885	22384885	8981	Gain	AC225552	LTR43
11	17091525	17092039	514	Loss	AC008079/AC007981/AC023491	L1M4c-L1M4c
12	17147850	17148359	509	Loss	AC023491	AluY-AluSx
13	17255132	17256943	1811	Loss	AC007981	AluSx-Na
14	17259091	17259821	730	Loss	AC007325	(TATAA)n-(TA)n
15	18619242	18619474	232	Loss	AC006549	(CACCAT)n-Na
16	18635423	18636050	627	Loss	AC006549	Na-Na
17	19188424	19189864	1440	Loss	AC004033	Na-AluSc
18	19280623	19283840	3217	Loss	AC214993	MLT2B1-AluJb
19	19751004	19776895	25891	Loss	AC002049	AluY-AluJb
20	19813055	19814522	1467	Loss	AC008018	AluY-AluY
21	19867770	19868094	324	Loss	AC008018	Na-Na
22	19964433	19965896	1463	Loss	AC007708	AluY-AluY
23	19964603	19966056	1453	Loss	AC009288	AluY-AluY
24	19964603	19966061	1458	Loss	AC012330	AluY-AluY
25	20352325	20353913	1588	Loss	AC018751	AluSx-AluSx
26	22230772	22233234	2462	Loss	AP000346	AluJb-Na
27	22604144	22641299	37155	Loss	AC158336	Na-Na
28	22673453	22727704	54251	Loss	AP000352	Subunit/GSTTP (22673143-22673594, 22727394-22727845)

ISSN: 1471-2164