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Table 2 Summarized information on sRNAs verified in this study

From: Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae

sRNAs strand upstream gene downstream gene 5' end 3' end size (nt) No. prediction
sRNA-Xoo 1 + PXO_02602 PXO_02603 4451914a 4452016b 103c; ~100d 1 NC-211
sRNA-Xoo 2 + PXO_01687 PXO_01686 3205976b 3206053b 78 e ~100d; 1 N
       ~85d   
sRNA-Xoo 3 + PXO_03614 PXO_03613 250669a 250761b 93c; ~80d 2 NC-137
sRNA-Xoo 4 - PXO_05774 PXO_02847 4955974a 4955830b 145c; ~150d 99 N
sRNA-Xoo 5 + PXO_00354 PXO_00353 2045785a 2045908b 124c;~130d; 2 NC-123
       ~100d   
sRNA-Xoo 6 - PXO_03506 PXO_03507 5217958b 5217771b 188 e ~250d 7 NC-248
sRNA-Xoo 7 - PXO_04745 PXO_04746 1379160a 1378796b 365c;~300d 1 NC-40
sRNA-Xoo 8 + PXO_04362 PXO_04361 1067954b 1068276b 323e;~300d 6 NC-87
  1. aEnds determined by 5' RACE mapping (5' RACE results are given in Additional file 4)
  2. bEnds determined by cloned sequences.
  3. cSize determined by RACE analysis
  4. dSize observed in Northern blot analysis.
  5. eSize determined by cloned sequences.
  6. No.: number of cloned sequences in our cDNA library