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Table 3 Haplotype analysis for the locus at chromosome 3p24

From: A unified framework for multi-locus association analysis of both common and rare variants

 

Discovery

Replication

Haplotype a

Frequency

Odds Ratio

P-value

Frequency

Odds Ratio

P-value

ACGCCAAT

0.799

0.98

0.835

0.782

0.83

0.248

GTATTGCC

0.072

0.76

0.040

0.105

1.01

0.974

GTATTAAT

0.033

1.42

0.069

0.043

0.73

0.365

GCACTACT

NA

NA

NA

0.014

7.11

0.012

GTATTACC

0.033

0.99

0.969

0.041

2.07

0.058

GCATCACC

0.038

1.27

0.195

NA

NA

NA

  1. a In order, the SNPs are rs4481118, rs4293672, rs6551000, rs6793031, rs1991332, rs7644516, rs2052760, and rs9310784.