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Table 3 Haplotype analysis for the locus at chromosome 3p24

From: A unified framework for multi-locus association analysis of both common and rare variants

  Discovery Replication
Haplotype a Frequency Odds Ratio P-value Frequency Odds Ratio P-value
ACGCCAAT 0.799 0.98 0.835 0.782 0.83 0.248
GTATTGCC 0.072 0.76 0.040 0.105 1.01 0.974
GTATTAAT 0.033 1.42 0.069 0.043 0.73 0.365
GCACTACT NA NA NA 0.014 7.11 0.012
GTATTACC 0.033 0.99 0.969 0.041 2.07 0.058
GCATCACC 0.038 1.27 0.195 NA NA NA
  1. a In order, the SNPs are rs4481118, rs4293672, rs6551000, rs6793031, rs1991332, rs7644516, rs2052760, and rs9310784.