|
Chromosome
|
Number of mapping read pairs
|
Average mapping quality
|
Mapping density
|
RRL density
|
|---|
|
1
|
5329141
|
15630
|
67.92
|
69.11
|
38
|
12860
|
1148
|
|
2
|
3968343
|
15049
|
68.14
|
71.29
|
39
|
10291
|
1149
|
|
3
|
3344481
|
11031
|
68.87
|
68.20
|
34
|
10303
|
1119
|
|
4
|
2758645
|
8155
|
68.53
|
70.40
|
34
|
11555
|
1098
|
|
5
|
1975228
|
5390
|
68.53
|
67.93
|
32
|
11547
|
1065
|
|
6
|
1258393
|
2782
|
68.31
|
69.69
|
30
|
13443
|
1056
|
|
7
|
1336228
|
4669
|
68.78
|
65.41
|
29
|
8221
|
1053
|
|
8
|
1119526
|
2866
|
68.63
|
72.82
|
27
|
10702
|
1067
|
|
9
|
1016524
|
3232
|
68.16
|
69.65
|
25
|
7907
|
1028
|
|
10
|
761372
|
2725
|
68.20
|
69.52
|
30
|
8278
|
1044
|
|
11
|
677920
|
1381
|
68.56
|
68.70
|
32
|
15879
|
1050
|
|
12
|
864303
|
3039
|
68.33
|
69.74
|
24
|
6758
|
989
|
|
13
|
780565
|
2107
|
68.47
|
66.72
|
24
|
8976
|
966
|
|
14
|
740461
|
3512
|
67.86
|
69.36
|
21
|
4504
|
929
|
|
15
|
669260
|
1378
|
68.56
|
68.47
|
19
|
9411
|
916
|
|
20
|
722054
|
2501
|
68.78
|
68.27
|
19
|
5592
|
911
|
|
Z
|
1845751
|
11981
|
68.05
|
68.79
|
40
|
6227
|
1271
|
- The number of concordant and discordant (in italics) mapping read pairs per chromosome are given. The average mapping quality of concordantly and discordantly mapping read pairs was calculated per chromosome. By calculating the mapping density, the distribution of mapping read pairs over the genome were evaluated. Mapping density was calculated by dividing the chromosome length by the number of concordantly/discordantly mapping read pairs. RRL density was calculated to ascertain the contribution of the RRL approach to differences in mapping density. RRL densities were calculated by dividing the chromosome length by the (in silico) estimated number of RRL fragments.
