|
Binning method
|
Total number of sequences
|
Time taken for analysis (minutes)
|
Total number of sequences assigned
|
Cumulative number of sequences assigned at different taxonomic levels
|
|---|
| | | | |
Phylum
|
Class
|
Order
|
|---|
|
INDUS
|
10000
|
13
|
8167
|
5793
|
4416
|
3748
|
|
TACOA
|
10000
|
180
|
8870
|
3518
|
2739
|
2545
|
|
SOrt-ITEMS
|
10000
|
347
|
8528
|
8173
|
6921
|
5506
|
|
MEGAN
|
10000
|
321
|
8866
|
8417
|
7559
|
7461
|
|
SPHINX
|
10000
|
23
|
9116
|
5346
|
3702
|
2726
|
|
Taxonomic level
|
Taxon name
|
Percentage** of sequences assigned
|
| | |
INDUS
|
TACOA
|
SOrt-ITEMS
|
MEGAN
|
SPHINX
|
|
Order
|
Burkholderiales
|
22.79
|
16.75
|
25.6
|
28.63
|
20.31
|
| |
Alteromonadales
|
12.81
|
5.57
|
17.24
|
18.65
|
5.57
|
| |
Rickettsiales
|
-
|
-
|
5.58
|
12.78
|
-
|
| |
Prochlorales
|
1.88
|
-
|
3.01
|
2.94
|
-
|
| |
Enterobacteriales
|
-
|
1.75
|
-
|
-
|
-
|
|
Class
|
Betaproteobacteria
|
24.31
|
16.76
|
28.2
|
28.89
|
20.31
|
| |
Gammaproteobacteria
|
19.85
|
9.48
|
22.91
|
24.6
|
16.71
|
| |
Alphaproteobacteria
|
-
|
-
|
15.55
|
18.41
|
-
|
| |
Flavobacteria
|
-
|
-
|
-
|
2.12
|
-
|
|
Phylum
|
Proteobacteria
|
52.54
|
32.1
|
73.6
|
75.71
|
47.78
|
| |
Cyanobacteria
|
3.73
|
0.53
|
4.84
|
4.83
|
-
|
| |
Firmicutes
|
1.66
|
1.25
|
0.27
|
0.25
|
4.17
|
| |
Bacteroidetes
|
-
|
0.01
|
1.97
|
2.19
|
-
|
| |
Tenericutes
|
-
|
0.47
|
-
|
-
|
1.51
|
- The cumulative percentage of sequences assigned by INDUS, TACOA, SOrt-ITEMS, MEGAN and SPHINX at order, class and phylum levels
- * Sample 1 refers to the subset of 10000 reads from the Sargasso sea data set [18] earlier analysed using MEGAN [2] and SOrt-ITEMS [4]
- ** Percentages shown are with respect to the total number of sequences (i.e 10000) in the Sample 1 data set. Only those taxa are shown for which at least one of the methods assigned a minimum of 1.5% of the sequences in the data set.
