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Table 2 Biological implication of regulatory modules

From: Extracting regulatory modules from gene expression data by sequential pattern mining

GO-slim SMD category Calcium Salt treatment Mutants Oxidative stress RNA processing Stress DNA damage Nutrient effects Chemical effects Chemostat Starvation Mutant vs Wild-type Total
Response to stress 154,651 142,140 28,467 16,889 23 3,230 527 462 29 2 18 0 346,438
Carbohydrate metabolism 15,360 19,295 19,747 1,534 0 1,545 156 6 196 18 0 5 57,862
Generation of precursor metabolites and energy 222 1,186 399 37 15,692 149 0 0 0 0 0 0 17,685
Biological process unknown 2,959 911 129 0 0 25 0 0 0 0 0 0 4,024
Cell homeostasis 0 0 0 514 0 0 0 0 0 0 0 0 514
Cellular respiration 0 0 1 13 0 0 0 0 0 0 0 0 14
Electron transport 6 0 0 0 0 1 0 0 0 0 0 0 7
Lipid metabolism 0 1 0 5 0 0 0 0 0 0 0 0 6
Amino acid and derevative metabolism 0 6 0 0 0 0 0 0 0 0 0 0 6
Sporulation 2 0 0 0 0 0 0 0 0 0 0 0 2
Total 173,200 163,539 48,743 18,992 15,715 4,950 683 468 225 20 18 5 426,558
  1. Regulatory modules: the cell contains the number of the RMs belonging to the specified context by both GO-slim term and SMD category