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Table 5 Comparison of performance as a function of the inclusion of features for the Rattus novergicus organism.

From: Improvement in the prediction of the translation initiation site through balancing methods, inclusion of acquired knowledge and addition of features to sequences of mRNA

Features

Ac

Pr

Se

Sp

Adj

No

97,14 (0,76)

19,35 (4,36)

82,09 (14,05)

97,26 (0,79)

89,67 (6,91)

ATG + STOP + GAG

95,38 (1,09)

13,54 (3,65)

88,09 (9,82)

96,54 (1,13)

92,32 (4,61)

ATG + STOP

95,64 (0,82)

13,83 (2,18)

88,09 (8,74)

95,69 (0,87)

91,89 (4,08)

ATG+STOP+CTG+GAC+GAG

96,48 (0,78)

16,93 (3,81)

88,09 (9,88)

95,44 (0,89)

91,76 (4,35)

ATG + STOP + CTG + GAC

95,03 (1,19)

12,68 (2,94)

88,09 (9,44)

95,08 (1,20)

91,58 (4,75)

ATG+STOP+CTG+GAC+GAG+GCC

96,38 (0,63)

16,06 (2,34)

87,18 (8,87)

96,45 (0,64)

91,82 (4,40)

ATG + GAC

96,57 (0,74)

17,09 (3,55)

87,09 (10,08)

96,64 (0,76)

91,86 (4,93)

ATG + CTG

96,42 (0,53)

16,22 (1,72)

87,09 (9,82)

96,49 (0,58)

91,79 (4,76)

STOP + GAC

96,30 (0,82)

16,08 (3,59)

87,09 (10,08)

96,37 (0,84)

91,73 (4,97)

ATG + STOP + GCC

96,11 (0,61)

15,52 (2,19)

87,09 (8,30)

96,15 (0,63)

91,62 (4,04)

ATG + STOP + GAC

95,68 (1,24)

14,55 (3,72)

87,09 (8,74)

95,73 (1,28)

91,41 (4,03)

ATG + STOP + CTG

94,97 (1,16)

12,54 (2,90)

87,09 (9,45)

95,02 (1,18)

91,05 (4,70)

ATG + GAG

96,70 (0,61)

17,54 (3,11)

86,09 (10,79)

96,76 (0,62)

91,42 (5,35)

ATG

96,32 (0,83)

15,97 (3,29)

86,09 (9,21)

96,40 (0,84)

91,24 (4,54)

STOP

95,99 (0,81)

14,62 (2,50)

86,09 (12,03)

96,07 (0,84)

91,08 (5,88)

ATG + GCC

96,93 (0,56)

18,05 (2,71)

84,09 (12,85)

97,02 (0,61)

90,56 (6,25)

STOP + CTG

95,86 (0,86)

14,04 (2,97)

84,09 (13,61)

95,95 (0,89)

90,02 (6,70)

STOP + GAG

96,36 (0,65)

15,51 (2,66)

84,09 (14,32)

96,45 (0,70)

90,27 (7,00)

CTG + GAC

96,84 (0,85)

17,90 (3,56)

83,09 (11,06)

96,94 (0,88)

90,01 (5,40)

GAG

97,35 (0,47)

20,13 (4,17)

82,09 (14,05)

97,46 (0,48)

89,78 (6,99)

GAC

96,99 (0,37)

17,82 (2,22)

82,09 (14,05)

97,10 (0,43)

89,59 (6,90)

GAG + GCC

91,65 (0,39)

22,00 (2,82)

81,18 (14,45)

97,77 (0,46)

89,48 (7,07)

CTG + GAG

97,25 (0,51)

19,32 (3,60)

81,18 (15,78)

97,37 (0,55)

89,28 (7,79)

CTG + GCC

97,47 (0,53)

21,04 (5,05)

81,09 (14,51)

97,59 (0,54)

89,34 (7,24)

GAC + GCC

97,54 (0,71)

21,73 (3,83)

80,09 (14,90)

97,67 (0,77)

88,88 (7,23)

GCC

97,52 (0,41)

20,74 (3,73)

80,09 (18,49)

97,65 (0,47)

88,87 (9,13)

GAC + GAG

97,50 (0,38)

20,79 (4,97)

80,09 (15,55)

97,63 (0,35)

88,86 (7,80)

CTG + GAC + GAG

97,05 (0,64)

18,25 (4,06)

80,09 (14,90)

97,18 (0,64)

88,64 (7,43)

CTG + GAC + GAG + GCC

97,52 (0,45)

20,75 (4,44)

79,09 (17,06)

97,66 (0,46)

88,37 (8,49)

STOP + GCC

96,91 (0,54)

17,15 (3,47)

79,09 (17,06)

97,05 (0,59)

88,07 (8,41)

CTG

96,69 (0,72)

16,20 (3,51)

78,18 (17,80)

96,83 (0,78)

87,50 (8,71)

  1. These results were obtained using a window size of -10+30 and the M-Clus method. The method of including acquired knowledge, InAKnow, was not used.