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Table 5 Comparison of performance as a function of the inclusion of features for the Rattus novergicus organism.

From: Improvement in the prediction of the translation initiation site through balancing methods, inclusion of acquired knowledge and addition of features to sequences of mRNA

Features Ac Pr Se Sp Adj
No 97,14 (0,76) 19,35 (4,36) 82,09 (14,05) 97,26 (0,79) 89,67 (6,91)
ATG + STOP + GAG 95,38 (1,09) 13,54 (3,65) 88,09 (9,82) 96,54 (1,13) 92,32 (4,61)
ATG + STOP 95,64 (0,82) 13,83 (2,18) 88,09 (8,74) 95,69 (0,87) 91,89 (4,08)
ATG+STOP+CTG+GAC+GAG 96,48 (0,78) 16,93 (3,81) 88,09 (9,88) 95,44 (0,89) 91,76 (4,35)
ATG + STOP + CTG + GAC 95,03 (1,19) 12,68 (2,94) 88,09 (9,44) 95,08 (1,20) 91,58 (4,75)
ATG+STOP+CTG+GAC+GAG+GCC 96,38 (0,63) 16,06 (2,34) 87,18 (8,87) 96,45 (0,64) 91,82 (4,40)
ATG + GAC 96,57 (0,74) 17,09 (3,55) 87,09 (10,08) 96,64 (0,76) 91,86 (4,93)
ATG + CTG 96,42 (0,53) 16,22 (1,72) 87,09 (9,82) 96,49 (0,58) 91,79 (4,76)
STOP + GAC 96,30 (0,82) 16,08 (3,59) 87,09 (10,08) 96,37 (0,84) 91,73 (4,97)
ATG + STOP + GCC 96,11 (0,61) 15,52 (2,19) 87,09 (8,30) 96,15 (0,63) 91,62 (4,04)
ATG + STOP + GAC 95,68 (1,24) 14,55 (3,72) 87,09 (8,74) 95,73 (1,28) 91,41 (4,03)
ATG + STOP + CTG 94,97 (1,16) 12,54 (2,90) 87,09 (9,45) 95,02 (1,18) 91,05 (4,70)
ATG + GAG 96,70 (0,61) 17,54 (3,11) 86,09 (10,79) 96,76 (0,62) 91,42 (5,35)
ATG 96,32 (0,83) 15,97 (3,29) 86,09 (9,21) 96,40 (0,84) 91,24 (4,54)
STOP 95,99 (0,81) 14,62 (2,50) 86,09 (12,03) 96,07 (0,84) 91,08 (5,88)
ATG + GCC 96,93 (0,56) 18,05 (2,71) 84,09 (12,85) 97,02 (0,61) 90,56 (6,25)
STOP + CTG 95,86 (0,86) 14,04 (2,97) 84,09 (13,61) 95,95 (0,89) 90,02 (6,70)
STOP + GAG 96,36 (0,65) 15,51 (2,66) 84,09 (14,32) 96,45 (0,70) 90,27 (7,00)
CTG + GAC 96,84 (0,85) 17,90 (3,56) 83,09 (11,06) 96,94 (0,88) 90,01 (5,40)
GAG 97,35 (0,47) 20,13 (4,17) 82,09 (14,05) 97,46 (0,48) 89,78 (6,99)
GAC 96,99 (0,37) 17,82 (2,22) 82,09 (14,05) 97,10 (0,43) 89,59 (6,90)
GAG + GCC 91,65 (0,39) 22,00 (2,82) 81,18 (14,45) 97,77 (0,46) 89,48 (7,07)
CTG + GAG 97,25 (0,51) 19,32 (3,60) 81,18 (15,78) 97,37 (0,55) 89,28 (7,79)
CTG + GCC 97,47 (0,53) 21,04 (5,05) 81,09 (14,51) 97,59 (0,54) 89,34 (7,24)
GAC + GCC 97,54 (0,71) 21,73 (3,83) 80,09 (14,90) 97,67 (0,77) 88,88 (7,23)
GCC 97,52 (0,41) 20,74 (3,73) 80,09 (18,49) 97,65 (0,47) 88,87 (9,13)
GAC + GAG 97,50 (0,38) 20,79 (4,97) 80,09 (15,55) 97,63 (0,35) 88,86 (7,80)
CTG + GAC + GAG 97,05 (0,64) 18,25 (4,06) 80,09 (14,90) 97,18 (0,64) 88,64 (7,43)
CTG + GAC + GAG + GCC 97,52 (0,45) 20,75 (4,44) 79,09 (17,06) 97,66 (0,46) 88,37 (8,49)
STOP + GCC 96,91 (0,54) 17,15 (3,47) 79,09 (17,06) 97,05 (0,59) 88,07 (8,41)
CTG 96,69 (0,72) 16,20 (3,51) 78,18 (17,80) 96,83 (0,78) 87,50 (8,71)
  1. These results were obtained using a window size of -10+30 and the M-Clus method. The method of including acquired knowledge, InAKnow, was not used.