Table 2 The 20 most abundant transcripts in P. notoginseng root
Rank | Contig | Gene ID | Gene name | No. of reads |
|---|---|---|---|---|
1 | contig14005 | No hit | Â | 3,358 |
2 | contig13784 | sp|Q9SVG4| | Reticuline oxidase -like protein | 3,043 |
3 | contig13829 | gb|AAX40471.1| | P. ginseng-specific abundant protein 3 | 2,114 |
4 | contig13823 | gb|AY829463.1| | P. ginseng-specific abundant protein 3 | 1,949 |
5 | contig00208 | sp|P30924| | 1,4-alpha-glucan- branching enzyme | 1,748 |
6 | contig00313 | dbj|BAF98277.1| | Acetyl-CoA acetyltransferase | 1,301 |
7 | contig00270 | gb|EEF30081.1| | Heat shock protein, putative | 1,129 |
8 | contig00110 | dbj|BAB68539.1| | (S)-reticuline oxidase-like protein | 1,048 |
9 | contig13785 | dbj|BAF33291.1| | P. ginseng dammarenediol-II synthase | 1,018 |
10 | contig13417 | gb|AAO38031.1| | Delta12-fatty acid acetylenase | 1,009 |
11 | contig00111 | gb|ACJ24907.2| | P. ginseng squalene epoxidase | 865 |
12 | contig00323 | No hit | Â | 778 |
13 | contig13999 | gb|DQ384527.1| | P. ginseng clone PG6L-4 | 747 |
14 | contig00310 | gb|EEF49052.1| | Heat shock protein, putative | 742 |
15 | contig00282 | gb|AAR17080.1| | Heat shock protein 70-3 | 711 |
16 | contig00123 | sp|P49035| | Sucrose synthase isoform 1 | 616 |
17 | contig13552 | gb|ABB29477.1| | Tonoplast intrinsic protein | 538 |
18 | contig00095 | sp|Q07511| | Formate dehydrogenase | 537 |
19 | contig00665 | ref|YP_588403.1| | Hypothetical protein | 527 |
20 | contig13555 | gb|EEF34649.1| | Heat shock protein | 511 |