A gene selection method for GeneChip array data with small sample sizes

BMC Genomics

Table 3 Results from real data for given cutoff p-values

p-value		0.05	0.025	0.01	0.005	0.0025
q-cutoff (from "qvalue")	MBIS	0.0422	0.0257	0.0132	0.00788	0.00468
	T	0.0446	0.0313	0.0210	0.0158	0.0122
	SAM	0.0738	0.0600	0.0556	0.0546	0.0544
# DE genes	MBIS	5290	4352	3383	2835	2383
	T	4355	3096	1849	1230	792
	SAM	3613	2223	958	482	242
# common DE genes	MBIS, T	3503	2411	1371	890	556
	MBIS, SAM	3608	2223	958	482	242
	T, SAM	3145	1870	767	396	202
Est. FDR	MBIS	0.0742	0.0451	0.0232	0.0138	0.00823
	T	0.0834	0.0586	0.0393	0.0295	0.0229

ISSN: 1471-2164