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Figure 2 | BMC Genomics

Figure 2

From: Gravitational and magnetic field variations synergize to cause subtle variations in the global transcriptional state of Arabidopsis in vitro callus cultures

Figure 2

Number of genes showing expression changes (up- or down- regulation) under different effective gravity ( g *) and magnetical/mechanical conditions. Number of genes up- or down- regulated was determined using both a raw limma p value < 0.01 (above the diagonal line) and a corrected FDR Rankprod p value < 0.05 (below the diagonal line) by FIESTA viewer v.1.0. Total number of genes up- or down-regulated is shown in bold. In diagonal (grey shaded) we show the number of gene expression changes in each condition (up-regulated/down-regulated genes between brackets). Other cells show the number of genes in common between two conditions (up-regulated in both/up-regulated in the column condition & down-regulated in the row condition/down-regulated in the column condition & up-regulated in the row condition/down-regulated in both conditions between brackets). This information has been extracted from Additional files 2 and 3 tables containing quantitative expression data for these probe sets and the list of common genes in more than one condition using limma p value filter and also FDR (RankProd) filter.

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