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Table 1 Summary of sequence read alignments to the reference genome

From: RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts

Sample In vitro embryos In vivo embryos
Pair end reads 26,906,451 x 2 38,184,547 x 2
Total sequenced fragments 26,906,451 38,184,547
Total mapped fragments 22,428,488 32,384,577
Uniquely mapped fragments 20,389,330 29,728,363
Fragments mapped to autosomes and X chromosome 19,556,926 28,362,794
Fragments mapped to annotated genes 13,304,981 16,976,922
Fragments mapped to annotated exons 6,942,761 8,185,094
Fragments overlapped with annotated introns 6,362,220 8,791,828