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Table 1 Highly significant rate and conservation shifting sites identified between the two major CIR sub-families

From: Characterization and gene expression analysis of the cir multi-gene family of plasmodium chabaudi chabaudi (AS)

Position in alignment

Residues in CIR sub-family:

 
 

A

B

 

Significant conservation shifting sites (CSS):

 

Z score

145

G W S R H Y I N L Q D

K

2.24

172

I

L

2.09

176

I V L F S

Y

2.95

196

C S W K L F Y I Q

F L I N

2.60

210

C

N K S G D

2.49

221

K

S L F

2.62

233

I A V T S M N Y K H L

C F R Y L

2.09

330

Y E R G V K A I R

P S A L T

2.50

349

L

S

2.74

350

S T K A L V P Y F I

L

2.21

353

W R Q S I G C

F

2.79

354

R T K G A V N

D G H

2.09

356

K E M N T Y

R

2.15

358

K E F T N I

Q H K R N

2.44

360

K

Q

2.21

361

K

Y

2.36

363

M

R

2.93

367

I

K

2.90

368

N

K

2.42

369

L

T A I K V

2.01

Significant rate shifting sites (RSS):

 

U value

8

M

M D K T N I L

19.66

25

V N K G A

T Y D V S E K N Q P G I

16.86

315

E K T A S Q P I S D R L Y G N

E P F L T

19.99

316

I Q D E N P A S G H L K V T R

S E D G Q R

29.63

322

I P S V T N A K E Q L C Y H G

S F N T P L

45.64

366

I V L D

L R V I P

18.26

  1. The most significant CSS (Z > 2) and RSS (U > 15) are listed, with the possible amino acids for each of the two sub-families at each position of the alignment. × refers to the IUPAC code, representing any amino acid.