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Table 1 Summary of the numbers of contigs retained in each step when characterizing the transcriptome of Paradoxornis webbianus bulomachus

From: Characterization of the transcriptome of an ecologically important avian species, the Vinous-throated Parrotbill Paradoxornis webbianus bulomachus (Paradoxornithidae; Aves)

Step Reference-guided assembly De novo assembly Total
  Zebra Finch Chicken   
Assembly 14,215 7,508 465,613 487,336
Coverage filtered1 10,076 680 57,035 67,791
BLASTed 9,923 528 16,028 26,479
Of which:     
Homology filtered2 6,359 31 1,389 7,779
GO annotated 5,426 50 889 6,365
  1. 1 Contigs filtered with coverage of > 10 X.
  2. 2 Contigs filtered with similarity (≥ 90%) and alignment length (≥ 200 amino acid residues) with their best matches used to analyze the top-hit species distribution.