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Table 1 Properties of the host species and their Sirevirus populations included in MASiVEdb

From: MASiVEdb: the Sirevirus Plant Retrotransposon Database

host speciesa common name clade genome size (Mb)b number of chr. intact SVs avg age (my) withENV
Arabidopsis thaliana thale cress eudicot 116 5 4 0.95 2
Brachypodium distachyon brome monocot 262 5 22 1.97 14
Chlamydomonas reinhardtii n/a alga 99 17 0 n/a 0
Fragaria vesca strawberry eudicot 203 7 1 0.45 0
Glycine max soybean eudicot 915 20 1337 0.45 1294
Lotus japonicus lotus eudicot 291 7 282 0.35 270
Oryza sativa indica rice monocot 362 12 25 2.18 14
Oryza sativa japonica rice monocot 370 12 91 1.29 42
Ostreococcus lucimarinus n/a alga 13 21 0 n/a 0
Populus trichocarpa poplar eudicot 304 19 0 n/a 0
Sorghum bicolor sorghum monocot 633 10 522 0.80 227
Theobroma cocoa cacao eudicot 214 10 77 3.17 52
Vitis vinifera grapevine eudicot 414 19 49 1.73 45
Zea mays maize monocot 1969 10 13833 1.29 516
Total      16243 1.20 2476
  1. aThe chromosome sequence data for Arabidopsis were downloaded from http://www.arabidopsis.org/, for brachypodium, Chlamydomonas, soybean, poplar, sorghum and grapevine from http://www.phytozome.net/, for strawberry from http://www.strawberrygenome.org/, for lotus from http://www.kazusa.or.jp/lotus/, for rice (indica) from http://rice.genomics.org.cn/rice/, for rice (japonica) from http://rgp.dna.affrc.go.jp/E/IRGSP/Build5/build5, for Ostreococcus from http://genome.jgi-psf.org/, for cacao from http://cocoagendb.cirad.fr/, and for maize from http://www.maizesequence.org/; bThe genome sizes do not represent the real estimates for each species, but correspond to the cumulative Mb found in sequence files for chromosomes after removing unanchored contigs and scaffolds; chr, chromosome; SVs, Sireviruses; my, million years; ENV, envelope-like gene.