Table 3 Target genes of miRNAs predicted by TargetScan and miRanda algorithms
From: Characterization of host microRNAs that respond to DNA virus infection in a crustacean
miRNA | overlapping genes |
|---|---|
miR-1 | KRAB domain-containing zinc finger protein |
miR-12 | acyl-CoA binding domain containing 7 |
miR-133 | ubiquitin-conjugating enzyme E2 A |
miR-13a | O-methyltransferase; fibroinase; Mn superoxide dismutase; DNA-binding nuclear protein p8; peroxin-11 C |
miR-2001 | Scavenger receptor class B; glycoprotein 25 l; vp28 (WSSV) |
miR-263a | Dihydropteridine reductase; Tetraspanins-like protein |
miR-275 | Peritrophin A; calcium and integrin binding protein CIB |
miR-276b | Vacuolar ATP synthase |
miR-278 | eukaryotic translation initiation factor 3 subunit |
miR-279 | ubiquitin protein ligase; Exoskeletal protein |
miR-281 | eukaryotic translation elongation factor 1 alpha (eEF-1a); elongation factor EF-1 alpha subunit |
miR-282 | ribose 5-phosphate isomerase A; small subunit ribosomal protein S6e |
miR-2a | Melanization interacting protein; Fortilin binding protein 1; O-methyltransferase |
miR-317 | hfb2 protein; (R)-3-amino-2-methylpropionate-pyruvate transaminase; Eukaryotic initiation factor 1A; maleylacetoacetate isomerase; hfb2 protein |
miR-34 | solute carrier family 37 (glycerol-3-phosphate transporter), member 2; Rpl6, NV12167; ribosomal protein L6; K02934 large subunit ribosomal protein L6e; ubiquitin protein ligase; K10573 ubiquitin-conjugating enzyme E2 A; Nuclear autoantigenic sperm protein; similar to elongase, putative; E3 ubiquitin ligase |
miR-7 | eukaryotic translation initiation factor 4A2; translation initiation factor eIF-4A; wsv477 (WSSV) |
miR-71 | actin 1; microsomal signal peptidase; signal peptidase complex subunit 3 |
miR-8* | hfb2 protein |
miR-87 | alanine-glyoxylate transaminase |
miR-92a | Eukaryotic initiation factor 1A; maleylacetoacetate isomerase |
miR-let7 | rab11; T-complex protein 1 subunit gamma |
miR-S1 | Astacin |
miR-S10 | Rnps1 protein; RNA-binding protein with serine-rich domain 1; nuclear distribution protein NUDC; isopentenyl-diphosphate delta isomerase 1 |
miR-S12 | ribosomal protein L5; Glucosyl/glucuronosyl transferase (Fragment); myosin heavy chain; Cationic trypsin-3 precursor Pretrypsinogen III; trypsin; eukaryotic translation initiation factor 2B; ribosomal protein L13A; microsomal glutathione S-transferase; glutathione S-transferase; methionyl aminopeptidase |
miR-S13 | similar to ribosomal protein L28; K02903 large subunit ribosomal protein L28e |
miR-S14 | putative beta-NAC-like protein; phosphatidylserine receptor |
miR-S3 | acireductone dioxygenase; ubiquitin C-terminal hydrolase; Duplex-specific nuclease |
miR-S5 | phosphatidylserine receptor; cystatin B |
miR-S6 | Glucosyl/glucuronosyl transferase |
miR-S9 | 3-hydroxyisobutyryl-CoA hydrolase |