Table 2 Gene functions of significantly differentially expressed F. graminearum genes based on annotation of functional categories in FunCat
Functional category | Down-regulation at 36 h | Up-regulation at 36 h | Down-regulation at 120 h | Up-regulation at 120 h | Whole genome |
|---|---|---|---|---|---|
Metabolism | 118 (28.2%) | 81 (22.9%) | 79 (16.5%) | 95 (22.9%) | 2324 (16.9%) |
Energy | 26 (6.22%) | 12 (3.39%) | 13 (2.71%) | 15 (3.62%) | 503 (3.66%) |
Cell cycle and DNA processing | 7 (1.67%) | 21 (5.94%) | 2 (0.41%) | 10 (2.41%) | 660 (4.81%) |
Transcription | 4 (0.95%) | 46 (13.0%) | 1 (0.2%) | 7 (1.69%) | 720 (5.24%) |
Protein synthesis | N.D | 35 (9.91%) | 1 (0.2%) | 2 (0.48%) | 370 (2.69%) |
Protein fate | 9 (2.15%) | 18 (5.09%) | 9 (1.88%) | 13 (3.14%) | 920 (6.70%) |
Protein with binding function | 40 (9.56%) | 81 (22.9%) | 24 (5.02%) | 49 (11.8%) | 1716 (12.5%) |
Regulation of metabolism | N.D | 3 (0.84%) | 3 (0.62%) | 1 (0.24%) | 242 (1.76%) |
Cellular transport | 75 (17.9%) | 38 (10.7%) | 51 (10.6%) | 52 (12.5%) | 1391 (10.1%) |
Cellular communication | 5 (1.19%) | 11 (3.11%) | 3 (0.62%) | 4 (0.96%) | 312 (2.27%) |
Cell rescue, defense, and virulence | 28 (6.69%) | 38 (10.7%) | 29 (6.06%) | 45 (10.8%) | 859 (6.26%) |
Interaction with the environment | 20 (4.78%) | 21 (5.94%) | 23 (4.81%) | 26 (6.28%) | 607 (4.42%) |
Systemic interaction with the environment | N.D | 1 (0.28%) | N.D | N.D | 12 (0.08%) |
Cell fate | 2 (0.47%) | 6 (1.69%) | 4 (0.83%) | 2 (0.48%) | 240 (1.74%) |
Development | 4 (0.95%) | 1 (0.28%) | 2 (0.41%) | 1 (0.24%) | 55 (0.40%) |
Biogenesis of cellular components | 13 (3.11%) | 18 (5.09%) | 10 (2.09%) | 13 (3.14%) | 617 (4.49%) |
Cell type differentiation | 1 (0.23%) | 11 (3.11%) | 3 (0.62%) | 6 (1.44%) | 273 (1.98%) |
Unclassified | 241 (57.6%) | 333 (54.59%) | 344 (71.9%) | 276 (66.6%) | 8894 (64.8%) |