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Table 4 Transcription factor families present in the gilthead sea bream transcriptome

From: Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing

Transcription Factor Family Example of family member Number of isotigs Percentage of total transcription factors
ZnF-C2H2 interleukin enhancer-binding factor 3 54 16.8
Chromatin-associated yy1 transcription represor factor 32 10.0
Cofactor e1a binding protein p300 25 10.9
Beta-scaffold signal transducer and activator of transcription 3 24 7.5
bZIP transcription factor jun-d 25 7.8
bHLH hypoxia-inducible factor 3 alpha 21 6.5
General transcription factor transcription factor 20 20 6.2
Protein-protein interaction zinc finger and btb domain containing 33 16 5.0
Homeobox six homeobox 1 14 4.4
Others bromodomain adjacent to zinc finger 2b 19 5.9
Nuclear hormone receptor Peroxisome proliferator-activated receptor alpha 15 4.7
ZnF-Others glucocorticoid receptor dna-binding factor 1 16 5.0
High mobility group box transcription factor sox-6 isoform 2 8 2.5
Trp-clusters interferon regulatory factor 2 9 2.8
Forkhead forkhead box o3 4 1.2
TEA tea domain family member 3 3 0.9
Dwarfin smad family member 2 3 0.9
E2F e2f transcription factor 6 2 0.6
  1. Genes were categorized according to the description in Uniprot [27] and TFCONES, Institute of Molecular and Cell Biology [28].
  2. Znf-C2H2: Zinc finger domain with two conserved cysteines and two histidines co-ordinate a zinc ion.
  3. bZIP basic leucine zipper.
  4. bHLH basic helix loop helix transcription domain.
  5. Trp-clusters: include Interferon regulatory transcription factors and E-twenty six transcription factors.
  6. TEA transcriptional enhancer factor.