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Table 7 Clustering of genes based on gene expression pattern, promoter structure and 3′UTR structure

From: The dependence of expression of NF-κB-dependent genes: statistics and evolutionary conservation of control sequences in the promoter and in the 3′ UTR

Cluster

1

2

3

4

Size

14

10

8

11

 

CCL20 (E)

BIRC2 (M)

BCL3 (M)

ICAM1 (L)

 

CXCL1 (E)

CD83(M)

BID (M)

IL27RA (L)

 

CXCL2 (E)

ECE1 (M)

CFB (M)

il32 (L)

 

CXCL3 (E)

GCH1 (M)

KLRC3 (M)

NFKB2 (L)

 

EFNA1 (E)

GFPT2 (M)

NFKBIE (M)

PTGES (L)

 

IL6 (E)

IFNGR2 (M)

RELB (M)

TAP1 (L)

 

IL8 (E)

NFKB1 (M)

TNFAIP2 (M)

TAPBP (L)

 

IRF1 (E)

SDC4 (M)

TRAF2 (M)

TNIP1 (L)

 

NFKBIA (E)

SLC7A2 (M)

 

TRAF1 (L)

 

PLAU (E)

SOD2 (M)

 

TRAF3 (L)

 

PTGS2 (E)

  

TRIM16 (L)

 

REL (E)

   
 

TNF (E)

   
 

TNFAIP3 (E)

   
  1. Result of clustering based on three main features of data set, including gene name and group to which it was assigned in Tian et al.[2] experiment.
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BMC Genomics

ISSN: 1471-2164

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