species | gene/operon | annotation (literature) |
---|---|---|
A. flavithermus, G. C56-R3, G. kaustophilus, G. Y412MC61, L. seeligeri, P. JDR2 | mcp | regulation of chemotaxis |
B. megaterium, G. kaustophilus, G. Y412MC61, P. JDR2, P. polymyxa | pucR | regulation of puc operon (purine catabolism) [20] |
B. amyloliquefaciens, B. atrophaeus, B. licheniformis, B. megaterium, B. pumilus | ycsFGI-kipIAR-ycsK | includes regulation of sporulation [63] |
B. amyloliquefaciens, B. atrophaeus, L. salivarius | gabP | transport of gamma-aminobutyrate [19] |
A. flavithermus, B. cereus, L. rhamnosus, O. oeni, P. JDR2, P. polymyxa, S. gordonii, S. sanguinis | opp, dpp | transport of oligopeptide and/or dipeptide |
B. amyloliquefaciens, B. atrophaeus, B. megaterium (2x), B. subtilis, G. kaustophilus, G. Y412MC61 | pucI | transport of allantoin |
B. amyloliquefaciens, B. atrophaeus (&ywoB), B. subtilis (&ywoB), P. JDR2 (- ywoD) | ywoCD | transport (ywoD) and hydrolysis (ywoC) |
B. anthracis, B. cereus, B. thuringiensis, B. weihenstephanensis, P. JDR2 (cpdB only) | K01238<> cpdB | hydrolysis nucleoside 2′,3′-cyclic phosphate + H2O < = > nucleoside 3′-phosphate |
L. seeligeri, O. oeni, Pb JDR2, P. polymyxa | ansA,ansZ | L-asparagine + H2O < = > L-aspartate + NH3[38] |
B. amyloliquefaciens, B. atrophaeus, B. licheniformis, B. pumilus, B. subtilis | argC | N-Acetyl-L-glutamate 5-semialdehyde < = > |
N-Acetyl-L-glutamate 5-phosphate | ||
L. plantarum, L. rhamnosus, L. citreum | aspA | L-aspartate < = > fumarate + NH3 |
S. mutans, S. gordonii, S. sanguinis, S. suis, S. thermophilus | citZ-citB-idh | conversion of citrate to alpha-ketoglutarate [24] |
B. amyloliquefaciens, B. atrophaeus, B. megaterium, B. pseudofirmus, G. C56-T3, G. kaustophilus, G. Y412MC61, P. sp. JDR2 | nasDEF | reduction of nitrite to NH3[18] |
B. atrophaeus, B. subtilis, G. Y412MC61 | pucH | allantoin + H2O < = > allantoate [20] |
[pucF: allantoate < = > ureidoglycolate + 2 NH3] | ||
B. anthracis (BC), B. cereus (C), B. thuringiensis (BC), B. weihenstephanensis (C), S. mutans (C) | thrBC | L-homoserine + ATP < = > O-phosphohomoserine + ADP O-phosphohomoserine + H2O < = > threonine + P |
ilvA: threonine < = > 2-oxobutanoate + NH3] [24] | ||
B. amyloliquefaciens, B. megaterium, B. pseudofirmus, B. subtilis, P. JDR2 | ureABC | urea + H2O < = > CO2 + 2 NH3 [64] |