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Table 4 Distribution and function of additional genes-operons that are putatively linked to GlnR-mediated regulation

From: Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli

species gene/operon annotation (literature)
A. flavithermus, G. C56-R3, G. kaustophilus, G. Y412MC61, L. seeligeri, P. JDR2 mcp regulation of chemotaxis
B. megaterium, G. kaustophilus, G. Y412MC61, P. JDR2, P. polymyxa pucR regulation of puc operon (purine catabolism) [20]
B. amyloliquefaciens, B. atrophaeus, B. licheniformis, B. megaterium, B. pumilus ycsFGI-kipIAR-ycsK includes regulation of sporulation [63]
B. amyloliquefaciens, B. atrophaeus, L. salivarius gabP transport of gamma-aminobutyrate [19]
A. flavithermus, B. cereus, L. rhamnosus, O. oeni, P. JDR2, P. polymyxa, S. gordonii, S. sanguinis opp, dpp transport of oligopeptide and/or dipeptide
B. amyloliquefaciens, B. atrophaeus, B. megaterium (2x), B. subtilis, G. kaustophilus, G. Y412MC61 pucI transport of allantoin
B. amyloliquefaciens, B. atrophaeus (&ywoB), B. subtilis (&ywoB), P. JDR2 (- ywoD) ywoCD transport (ywoD) and hydrolysis (ywoC)
B. anthracis, B. cereus, B. thuringiensis, B. weihenstephanensis, P. JDR2 (cpdB only) K01238<> cpdB hydrolysis nucleoside 2′,3′-cyclic phosphate + H2O < = > nucleoside 3′-phosphate
L. seeligeri, O. oeni, Pb JDR2, P. polymyxa ansA,ansZ L-asparagine + H2O < = > L-aspartate + NH3[38]
B. amyloliquefaciens, B. atrophaeus, B. licheniformis, B. pumilus, B. subtilis argC N-Acetyl-L-glutamate 5-semialdehyde < = >
N-Acetyl-L-glutamate 5-phosphate
L. plantarum, L. rhamnosus, L. citreum aspA L-aspartate < = > fumarate + NH3
S. mutans, S. gordonii, S. sanguinis, S. suis, S. thermophilus citZ-citB-idh conversion of citrate to alpha-ketoglutarate [24]
B. amyloliquefaciens, B. atrophaeus, B. megaterium, B. pseudofirmus, G. C56-T3, G. kaustophilus, G. Y412MC61, P. sp. JDR2 nasDEF reduction of nitrite to NH3[18]
B. atrophaeus, B. subtilis, G. Y412MC61 pucH allantoin + H2O < = > allantoate [20]
[pucF: allantoate < = > ureidoglycolate + 2 NH3]
B. anthracis (BC), B. cereus (C), B. thuringiensis (BC), B. weihenstephanensis (C), S. mutans (C) thrBC L-homoserine + ATP < = > O-phosphohomoserine + ADP O-phosphohomoserine + H2O < = > threonine + P
ilvA: threonine < = > 2-oxobutanoate + NH3] [24]
B. amyloliquefaciens, B. megaterium, B. pseudofirmus, B. subtilis, P. JDR2 ureABC urea + H2O < = > CO2 + 2 NH3 [64]
  1. The related data can be found in Additional file 4.