Overview of read mapping to the A. queenslandica genome. (A) Number of reads uniquely mapped to the genome for each developmental stage sequenced. (B) Percent of reads mapping to exons and introns of predicted gene models (Aqu1), and to intergenic regions. (C) Distribution of intergenic reads in relation to distance from the 5’ end (transcription start site; TSS) or 3’ end (transcription termination site; TTS) of predicted gene models. The average number of reads per 10 million mapped reads per sample was summed in 1 kb segments from the boundaries of annotated genes. (D) Percent of intergenic reads that map in proximity to predicted genes.