Skip to main content

Table 6 Pair-wise comparison of Phi correlations of probe ratios greater than 2 within each sample group after CBS smoothing

From: Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development

Sample* Phi correlation value
Replicate 1 Replicate 2 Replicate 3 Replicate 4
Normal Replicate 1 1   1.000
UnAmp/UnAmp Replicate 2 1.000 1
Replicate 3 1.000 1.000 1  
Replicate 4 1.000 1.000 1.000 1.000
Normal Replicate 1 1   0.842
Amp-R/UnAmp Replicate 2 0.855 1
Replicate 3 0.840 0.843 1  
Replicate 4 0.877 0.840 0.809 1
Normal Replicate 1 1   0.805
Amp-G/UnAmp Replicate 2 0.853 1
  Replicate 3 0.839 0.796 1  
  Replicate 4 0.773 0.814 0.707 1
CF1 Replicate 1 1   0.611
Amp-R/UnAmp Replicate 2 0.597 1
Replicate 3 0.764 0.665 1  
Replicate 4 0.457 0.625 0.520 1
CF1 Amp-G/UnAmp Replicate 1 1   0.667
  Replicate 2 0.687 1
  Replicate 3 0.679 0.777 1  
  Replicate 4 0.632 0.656 0.589 1
CF2 Replicate 1 1   0.768
Amp-R/UnAmp Replicate 2 0.824 1
Replicate 3 0.697 0.744 1  
Replicate 4 0.796 0.793 0.707 1
CF2 Replicate 1 1   0.780
Amp-G/UnAmp Replicate 2 0.865 1
Replicate 3 0.798 0.746 1  
Replicate 4 0.762 0.728 0.838 1
  1. * Indicates samples on CGH array.
  2. The median Phi correlation values from top to bottom are shown in bold. UnAmp (unamplified samples); Amp-R (REPLI-g amplified samples); Amp-G (GenomiPhi amplified samples).