Table 6 Pair-wise comparison of Phi correlations of probe ratios greater than 2 within each sample group after CBS smoothing
From: Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development
Sample* | Phi correlation value | ||||
|---|---|---|---|---|---|
Replicate 1 | Replicate 2 | Replicate 3 | Replicate 4 | ||
Normal | Replicate 1 | 1 | 1.000 | ||
UnAmp/UnAmp | Replicate 2 | 1.000 | 1 | ||
Replicate 3 | 1.000 | 1.000 | 1 | ||
Replicate 4 | 1.000 | 1.000 | 1.000 | 1.000 | |
Normal | Replicate 1 | 1 | 0.842 | ||
Amp-R/UnAmp | Replicate 2 | 0.855 | 1 | ||
Replicate 3 | 0.840 | 0.843 | 1 | ||
Replicate 4 | 0.877 | 0.840 | 0.809 | 1 | |
Normal | Replicate 1 | 1 | 0.805 | ||
Amp-G/UnAmp | Replicate 2 | 0.853 | 1 | ||
Replicate 3 | 0.839 | 0.796 | 1 | ||
Replicate 4 | 0.773 | 0.814 | 0.707 | 1 | |
CF1 | Replicate 1 | 1 | 0.611 | ||
Amp-R/UnAmp | Replicate 2 | 0.597 | 1 | ||
Replicate 3 | 0.764 | 0.665 | 1 | ||
Replicate 4 | 0.457 | 0.625 | 0.520 | 1 | |
CF1 Amp-G/UnAmp | Replicate 1 | 1 | 0.667 | ||
Replicate 2 | 0.687 | 1 | |||
Replicate 3 | 0.679 | 0.777 | 1 | ||
Replicate 4 | 0.632 | 0.656 | 0.589 | 1 | |
CF2 | Replicate 1 | 1 | 0.768 | ||
Amp-R/UnAmp | Replicate 2 | 0.824 | 1 | ||
Replicate 3 | 0.697 | 0.744 | 1 | ||
Replicate 4 | 0.796 | 0.793 | 0.707 | 1 | |
CF2 | Replicate 1 | 1 | 0.780 | ||
Amp-G/UnAmp | Replicate 2 | 0.865 | 1 | ||
Replicate 3 | 0.798 | 0.746 | 1 | ||
Replicate 4 | 0.762 | 0.728 | 0.838 | 1 | |