|
SNP class and sub-class (GoldenGate clustering)
|
Number of SNPs
|
% genotypes with concordant allele calls
|
|---|
|
SNaPshot
|
GoldenGate
|
Compared between genotyping systems1
|
|---|
|
Polymorphic
|
70
|
62
|
38
|
80.45
|
|
3 clusters (1 sub-genome amplified)
|
N/A
|
17
|
12
|
87.01
|
|
3 clusters (3 sub-genomes amplified)
|
N/A
|
11
|
5
|
86.00
|
|
2 clusters
|
N/A
|
20
|
13
|
80.15
|
|
5 clusters
|
N/A
|
2
|
1
|
48.65
|
|
Dispersed
|
N/A
|
12
|
7
|
71.71
|
|
Diagnostic
|
4
|
3
|
1
|
97.67
|
|
Monomorphic
|
15
|
16
|
7
|
39.11
|
|
Failed
|
7
|
14
|
5
|
N/A
|
|
Total
|
96
|
96
|
51
|
76.43
|
- 1 SNPs are classed according to the GoldenGate™ results.
