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Table 2 Pairwise alignments of Xenopus cDNA clones and Xl-PSID consensus sequences: Similarity groupings by e-value

From: Probing the Xenopus laevis inner ear transcriptome for biological function

Similarity group

Number of XE/Xl-PSID pairwise alignments

Number of TE/Xl-PSID pairwise alignments

High (e = 0-10 -100 )

45

31

Moderate (e = 10 -99 -10 -50 )

4

17

Weak (e = 10 -49 -10 -15 )

9

10

Low (e > 10 -14 )

38

43

Affirmative pairwise alignments (H, M, W)

58

58

(47 unique Xl-PSIDs)

  1. Xl-PSIDs were aligned to Xenopus laevis (XE) and Xenopus tropicalis (TE) inner ear library clone sequences using the BLASTN algorithm. Pairwise alignments were sorted into similarity groups based on e-value. Xl-PSIDs with multiple pairwise alignments to cDNA library clones were counted once. Four Xl-PSIDs aligned to two TE cDNA clones, and one Xl-PSID aligned to eight TE cDNA clones.
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BMC Genomics

ISSN: 1471-2164

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