Probing the Xenopus laevis inner ear transcriptome for biological function

BMC Genomics

Table 4 DAVID functional clustering of Xl-PSIDs in the 10 ^th equal tally and 10 ^th equal intensity deciles

4A 10th Equal tally decile
GO terms		Number of DAVID IDs
	cellular process	366
	metabolic process	322
	primary metabolic process	287
	cellular metabolic process	278
	macromolecule metabolic process	204
	macromolecular complex	198
	cellular macromolecule metabolic process	190
	cytoplasmic part	190
	biosynthetic process	176
	protein metabolic process	175
	cellular biosynthetic process	171
	cellular protein metabolic process	161
	gene expression	138
	intracellular non-membrane-bounded organelle	137
	non-membrane-bounded organelle	137
	cellular macromolecule biosynthetic process	129
	macromolecule biosynthetic process	129
	structural molecule activity	118
	translation	112
	ribonucleoprotein complex	93
	structural constituent of ribosome	82
	Ribosome	82
SP_PIR_Keywords
	ribonucleoprotein	55
	ribosomal protein	54
KEGG
	Ribosome	73
4B 10 ^th Equal intensity decile
GO terms		Number of DAVID IDs
	translation	26
	non-membrane-bounded organelle	26
	Intracellular non-membrane-bounded organelle	26
	structural constituent of ribosome	25
	Ribosome	25
	structural molecule activity	25
	ribonucleoprotein complex	25
SP_PIR_Keywords
	ribosomal protein	16
	ribonucleoprotein	15
KEGG
	Ribosome	22

The functional clusters with the highest DAVID enrichment scores are shown for Xl-PSIDs in the 10th equal tally (A) and the 10th equal intensity (B) decile. DAVID assigned 905 IDs to the 10^th equal tally decile, resulting in 121 annotation clusters. DAVID assigned 35 IDs to the 10^th equal intensity decile, resulting in 3 annotation clusters.

ISSN: 1471-2164