Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome

Table 2 Putative genes identified in Silene BAC clones

Gene name	Found in	TAIR accession	Putative function	ProDom annotation	%identity
ESP1	S. latifolia/ S. vulgaris	AT4G22970	Separase	Separase	34/36
BIP1	S. latifolia/ S. vulgaris	AT5G28540	Luminal-binding protein 1	ATP-binding	80/74
ACBP1	S. latifolia/ S. vulgaris	AT5G53470	Acyl-CoA-binding domain-containing protein 1	Lipid-binding	44/42
PAR1	S. latifolia/ S. vulgaris	AT5G53500	WD-40 repeat family protein	Hydrolase phosphatase	41/42
PAR2*	S. latifolia/ S. vulgaris	AT5G41970	Uncharacterized protein	Metal dependent	56/70
PAR3	S. latifolia	AT3G15000	Uncharacterized protein	Plastid developmental protein DAG	54/-
SVA1	S. vulgaris	AT4G27700	Rhodanese-like domain-containing protein	Rhodanese	-/71

% identity with A. thaliana sequence is given first for S. latifolia and then for S. vulgaris. * PAR2 is truncated approximately by half in S. latifolia.
Putative genes were identified using BLASTX searches against the Arabidopsis thaliana proteome (TAIR10) with an E-value cut-off of 1E-4, ProDom annotations were used to determine putative function or detect repeats and transposable elements.

ISSN: 1471-2164