A defect in dystrophin causes a novel porcine stress syndrome

BMC Genomics

Table 2 Associations of SNP in dystrophin with the stress response

SNP	dbSNP#	Basepair^a	A1^b	F_A^c	F_U	A2	P-value	-Log(p)
84116_121	ss410758942	26546329	A	0	0.1977	G	0.000245	3.6117
84102_437	ss410758941	26635210	T	0	0.1837	C	0.001723	2.7637
85904_613	ss410758951	27322071	T	0.03509	0.1886	C	0.004925	2.3076
85890_783	ss410758971	28023949	C	0	0.7485	T	1.06E-23	22.9759
ALGA0099514	rs80929421	27689253	C	0	0.7401	T	2.19E-23	22.6605
ALGA0099513	rs80914436	27716318	C	0	0.7401	T	2.19E-23	22.6605
85896_775	ss410758960	27762149	T	0	0.1579	A	0.001687	2.7729
84024_171	ss410758936	27786935	C	0	0.1598	A	0.00143	2.8447
85894_336	ss410758939	27840323	A	0	0.4971	C	1.28E-11	10.8935
84339_200	ss410758953	27922373	G	0	0.01163	A	0.4055	0.3920
84008_345	ss410758980	27922512	A	0	0.1579	G	0.001535	2.8139
84339_333	ss410758954	27934448	A	0	0.005848	G	0.5594	0.2523
84002_411	ss410758948	27942562	C	0	0.2059	G	0.000195	3.7091
84000_82	ss410758968	28119423	G	0	0.1471	A	0.001967	2.7062
85413_679	ss410758963	28465839	C	0	0.02013	T	0.2848	0.5455
85413_571	ss410758964	28465948	A	0	0.00578	G	0.5617	0.2505
85404_372	ss410758935	28517880	-	0	0.2073	A	0.000239	3.6220

^aMap position is based on SGSC Sscrofa build 9.2.
^bA1 and A2 represent the different alleles.
^cF_A is the frequency of allele 1 in cases and F_U is the frequency of A1 in unaffected.

ISSN: 1471-2164