Table 3 Methanogen-specific COGs ID and their descriptions
From: A pursuit of lineage-specific and niche-specific proteome features in the world of archaea
COG ID | Description | Domains found on TIGR | Domains found on Pfam |
|---|---|---|---|
COG4058 | Methyl coenzyme M reductase, alpha subunit | met-coenzyme M reductase | met-coenzyme M reductase |
COG4054 | Methyl coenzyme M reductase, beta subunit | ||
COG4056 | Methyl coenzyme M reductase, subunit C | ||
COG4055 | Methyl coenzyme M reductase, subunit D | ||
COG2710 | Nitrogenase molybdenum-iron protein, alpha and beta chains | methanogenesis marker protein 13 | oxidored-nitr |
COG1348 | Nitrogenase subunit NifH (ATPase) | NifH | Fer4-NifH |
COG4008 | Predicted metal-binding transcription factor | methanogenesis marker protein 9 | Not found |
COG4070 | Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family | methanogenesis marker protein 3 | |
COG4002 | Predicted phosphotransacetylase | methanogenesis marker protein 4 | |
COG4032 | Predicted thiamine-pyrophosphate-binding protein | sulfopyruvate decarboxylase | TPP enzyme |
COG2144 | Selenophosphate synthetase-related proteins | methanogenesis marker protein 2 | AIRS |
COG4063 | Tetrahydromethanopterin S-methyltransferase, subunit A | Methyl transferase (Mtr) | Methyl transferase (Mtr) |
COG4062 | Tetrahydromethanopterin S-methyltransferase, subunit B | ||
COG4061 | Tetrahydromethanopterin S-methyltransferase, subunit C | ||
COG4060 | Tetrahydromethanopterin S-methyltransferase, subunit D | ||
COG4059 | Tetrahydromethanopterin S-methyltransferase, subunit E | ||
COG4050 | Uncharacterized protein conserved in archaea | methanogenesis marker protein 5 | Domain of unknown function (DUF) |
COG4051 | Uncharacterized protein conserved in archaea | methanogenesis marker protein 17 | |
COG4065 | Uncharacterized protein conserved in archaea | methanogenesis marker protein 14 | |
COG4014 | Uncharacterized protein conserved in archaea | *** | |
COG4029 | Uncharacterized protein conserved in archaea | methanogenesis marker protein 6 | |
COG4052 | Uncharacterized protein related to methyl coenzyme M reductase subunit C | methanogenesis marker protein 7 |