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Table 3 Distribution of the genotyped SNPs in contigs

From: Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout

Number of SNPs/contig

Number of SNPs in:

Validation Panel

Successfully genotyped

Monomorphic

Heterozygous

True

1

151

133

34

13

86

2

154

126

39

21

66

3

141

115

34

24

57

4

98

79

30

20

29

5

91

69

25

20

24

6

81

72

24

30

18

7

70

53

29

14

10

8

48

39

18

11

10

9

45

40

19

12

9

10

38

29

7

12

10

> 10

235

203

87

85

31

Total

1152

958

346

262

350

  1. The number of SNPs identified within each contig type were summarized for the validation panel and for successfully genotyped, monomorphic, heterozygous and for true SNPs.
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BMC Genomics

ISSN: 1471-2164

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