Table 4 Observed occurrence of the different SNP types (transitions and transversions)
Type | Validation panel | polymorphic SNPs | Syn. SNPs | Non Syn. SNPs | |
|---|---|---|---|---|---|
Transition (Ts) | AG | 325 | 88 | 71 | 11 |
CT | 529 | 184 | 169 | 4 | |
Transversion (Tv) | AC | 98 | 28 | 22 | 5 |
AT | 49 | 14 | 8 | 3 | |
CG | 58 | 16 | 12 | 3 | |
GT | 93 | 20 | 17 | 2 | |
TOTAL | 1152 | 350 | 299 | 28 | |
% ratio Ts/Tv | 2.87 | 3.48 | 4.07 | 1.15 |