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Table 3 Pairwise breed comparison of correlation of phase and proportion of phase agreement at various distances

From: Estimation of linkage disequilibrium in four US pig breeds

Breeds Compared Distance1 Proportion of r with opposite sign2 Correlation of r ij(k) and r ij(k') 3
  0-10 kb 0.107 0.875
  10-50 kb 0.184 0.762
Duroc - Hampshire 50-100 kb 0.246 0.668
  0.9-1 Mb 0.391 0.408
  4.9-5 Mb 0.469 0.210
  0-10 kb 0.108 0.872
  10-50 kb 0.186 0.773
Duroc - Landrace 50-100 kb 0.251 0.681
  0.9-1 Mb 0.395 0.438
  4.9-5 Mb 0.485 0.190
  0-10 kb 0.104 0.870
  10-50 kb 0.195 0.761
Duroc - Yorkshire 50-100 kb 0.252 0.670
  0.9-1 Mb 0.396 0.422
  4.9-5 Mb 0.468 0.201
  0-10 kb 0.099 0.882
  10-50 kb 0.184 0.776
Hampshire - Landrace 50-100 kb 0.242 0.697
  0.9-1 Mb 0.392 0.441
  4.9-5 Mb 0.475 0.189
  0-10 kb 0.113 0.871
  10-50 kb 0.189 0.771
Hampshire - Yorkshire 50-100 kb 0.249 0.686
  0.9-1 Mb 0.389 0.439
  4.9-5 Mb 0.459 0.245
  0-10 kb 0.087 0.921
  10-50 kb 0.160 0.842
Landrace - Yorkshire 50-100 kb 0.204 0.783
  0.9-1 Mb 0.353 0.571
  4.9-5 Mb 0.448 0.297
  1. 1Interval length in kb
  2. 2Proportion of SNP pairs having r with reversed sign within the interval
  3. 3Correlation of phase between two breeds (k and k') within the given interval