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Table 2 Transcript derived fragments (TDFs) from  P  .  hopeiensis  showing drought-responsive expression, with homologies to genes in the  P  .  trichocarpa  genome database

From: Transcriptional profiling by cDNA-AFLP analysis showed differential transcript abundance in response to water stress in Populus hopeiensis

TDFs

Locus/Gene Model

Aliasesa

Annotation

E-value

Accession no.b

ATG Locus/Gene Model

TDF48

POPTR_0011s09860

---

NAD-dependent malate dehydrogenase

3.40E-50

JK475089

AT3G15020

TDF63

POPTR_0019s15110

Pt-CYP73.3

Trans-cinnamate 4-monooxygenase.

0

JK475090

AT2G30490

TDF70

POPTR_0001s16730

Pt-ALDH7.1

Aldehyde dehydrogenase

6.40E-85

JK475091

AT1G54100

TDF89

POPTR_0002s05660

Pt-OEE2.2

Similar to photosystem II oxygen-evolving complex protein 2

1.50E-122

JK475092

AT2G30790

TDF91

POPTR_0010s17440

PtEXPA3

Rare lipoprotein A (RlpA)-like double-psi beta-barre

3.80E-106

JK475093

AT2G03090

TDF98

POPTR_0016s00210

---

Sodium/hydrogen exchanger protein

1.00E-85

JK475094

AT1G79610

TDF125

POPTR_0001s01380

---

Dehydration-responsive protein

1.20E-80

JK475095

AT4G19120

TDF126

POPTR_0012s02430

---

rRNA 2'-O-methyltransferase fibrillarin

7.20E-128

JK475096

AT5G53060

TDF137

POPTR_0001s36870

---

Similar to early-responsive to dehydration stress protein (ERD4)

2.60E-96

JK475097

AT1G80780

TDF139

POPTR_0010s21710

---

Photosystem 2 reaction center PsbP family protein

0

JK475098

AT2G39470

TDF171

POPTR_0008s16110

Pt-IAA14.1

Auxin-responsive protein IAA

1.80E-96

JK475099

AT4G14550

TDF181

POPTR_0006s13650

---

Alanine dehydrogenase/PNT, N-terminal domain

6.20E-73

JK475100

AT4G33150

TDF189

POPTR_0016s09240

---

Isocitrate dehydrogenase (NAD+)

4.70E-99

JK475101

AT5G03290

TDF196

POPTR_0001s00550

---

Chromodomain-helicase-DNA-binding family protein

3.40E-131

JK475102

AT3G53030

TDF273

POPTR_0005s19710

Pt-ATR1.1

NADPH-ferrihemoprotein reductase

1.90E-52

JK475103

AT4G24520

TDF285

POPTR_0001s19100

---

Taurine catabolism dioxygenase TauD, TfdA family

6.90E-94

JK475104

AT3G21360

TDF287

POPTR_0003s13310

Pt-F.1

Ferric reductase like transmembrane component

9.90E-94

JK475105

AT1G64060

TDF295

POPTR_0001s04990

Pt-FAD2.2

Fatty acid desaturase

2.40E-179

JK475106

AT3G12120

TDF325

POPTR_0014s15710

Pt-ACO1.4

1-aminocyclopropane-1-carboxylate oxidase

6.10E-141

JK475107

AT1G12010

TDF333

POPTR_0013s12730

---

Pristanoyl-CoA/acyl-CoA oxidase

1.70E-67

JK475108

AT1G06310

TDF360

POPTR_0017s02330

---

NADH-ubiquinone oxidoreductase

1.10E-163

JK475109

AT5G37510

TDF361

POPTR_0011s11390

---

S)-2-hydroxy-acid oxidase

8.10E-44

JK475110

AT3G14415

TDF370

POPTR_0005s15660

---

bisphosphate carboxylase small chain 1A

4.40E-75

JK475111

AT1G67090

TDF372

POPTR_0003s13370

---

K + potassium transporter

4.60E-162

JK475112

AT4G23640

TDF382

POPTR_0012s09570

Pt-GAPDH1.1

Glyceraldehyde-3-phosphate dehydrogenase

1.20E-35

JK475113

AT3G04120

TDF388

POPTR_0002s05640

---

Aldo/keto reductase family protein

5.70E-84

JK475114

AT5G37570

TDF399

POPTR_0004s17980

Pt-ERD7.1

Early-responsive to dehydration 7

0

JK475115

AT2G17840

TDF405

POPTR_0003s08760

Pt-GDCH.3

Glycine cleavage system protein H precursor

9.30E-113

JK475116

AT2G35370

TDF417

POPTR_0002s00210

---

Mitochondrial carrier protein

7.70E-115

JK475117

AT5G26780

TDF418

POPTR_0006s10200

---

Iron/ascorbate family oxidoreductases

8.30E-136

JK475118

AT2G30830

TDF440

POPTR_0007s06400

Pt-IFS1.44

Cytochrome P450 CYP2 subfamily

2.10E-94

JK475090

AT4G34490

TDF459

POPTR_0002s08230

Pt-ALDH3.1

Aldehyde dehydrogenase

3.00E-68

JK475109

AT1G44170

TDF477

POPTR_0014s17400

Pt-PSAL.2

Photosystem I reaction centre subunit XI

1.20E-169

JK475121

AT4G12800

TDF483

POPTR_0003s12150

---

BCL2-associated athanogene-like proteins

4.30E-90

JK475122

AT2G23150

TDF500

POPTR_0003s06560

Pt-LOX3.2

Lipoxygenase

2.30E-87

JK475123

AT3G03590

  1. Aliasesa were obtained from the Joint Genome Institute (JGI: http://www.jgi.doe.gov/); Accession nos.b were obtained from NCBI GeneBank (http://www.ncbi.nlm.nih.gov/genbank/); all sequences were also searched for at TAIR. The details are provided in the supplementary data (Additional file 6: Table S2).