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Table 2 Overrepresented GO terms of MS-specific/preferential genes that only hit rice stigma dataset

From: Identification of genes specifically or preferentially expressed in maize silk reveals similarity and diversity in transcript abundance of different dry stigmas

GO Terma Term typea Query itemb Query totalc Bg itemd Bg totale P-valuef FDRg
protein amino acid phosphorylation P 67 294 2387 39203 1.50E-17 8.60E-15
oligopeptide transport P 12 294 105 39203 4.10E-11 2.90E-09
fatty acid biosynthesis process P 10 294 159 39203 5.00E-07 2.60E-05
apoptosis P 8 294 168 39203 5.00E-05 0.002
regulation of transcription P 46 294 3352 39203 0.00024 0.0069
multidrug transport P 5 294 79 39203 0.00035 0.0076
protein serine/threonine kinase activity F 67 294 2248 39203 8.30E-19 2.80E-16
ATP binding F 85 294 5133 39203 1.50E-09 6.30E-08
acyltransferase activity F 11 294 187 39203 2.70E-07 5.70E-06
sugar binding F 10 294 150 39203 2.90E-07 5.80E-06
transcription factor activity F 28 294 1390 39203 7.50E-06 0.00012
sequence-specific DNA binding F 22 294 985 39203 1.40E-05 0.00022
transporter activity F 37 294 2411 39203 0.00011 0.0015
  1. aGO term classifications: P, Biological Process; C, Cellular Component; F, Molecular Function.
  2. bQuery item number in MS preferential expressed genes.
  3. cTotal annotated query item number in agriGO.
  4. dQuery item number in maize genome version 5a.
  5. eTotal annotated item number in maize genome version 5a.
  6. fDetermined by Fisher exact test.
  7. gDetermined by Benjamini–Hochberg–Yekutieli procedure.
  8. GO terms with P-value < 0.001 and FDR ≤ 0.05 were regarded as overrepresented terms.