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Table 3 Overrepresented GO terms of genes distinctively presented in specific/preferential dataset of maize silk

From: Identification of genes specifically or preferentially expressed in maize silk reveals similarity and diversity in transcript abundance of different dry stigmas

GO Terma Term typea Query itemb Query totalc Bg itemd Bg totale P-valuef FDRg
lipid transport P 9 476 104 39203 6.00E-06 0.0034
amino acid transport P 6 476 52 39203 4.20E-05 0.0079
chitin catabolic process P 5 476 43 39203 0.00018 0.025
tetracycline transport P 6 476 75 39203 0.00033 0.029
response to antibiotic P 6 476 84 39203 0.0006 0.038
amino acid transmembrane transporter activity F 6 476 28 39203 1.00E-06 0.00019
chitinase activity F 5 476 43 39203 0.00018 0.022
small conjugating protein ligase activity F 13 476 324 39203 0.00023 0.022
tetracycline transporter activity F 6 476 75 39203 0.00033 0.022
lipid binding F 9 476 202 39203 0.00096 0.049
coenzyme binding F 20 476 734 39203 0.001 0.049
integral to membrane C 51 476 2156 39203 1.90E-05 0.0016
peroxisome C 5 476 33 39203 4.80E-05 0.0016
  1. aGO term classifications: P, Biological Process; C, Cellular Component; F, Molecular Function.
  2. bQuery item number in MS preferential expressed genes.
  3. cTotal annotated query item number in agriGO.
  4. dQuery item number in AGPv2 5a.
  5. eTotal annotated item number in AGPv2 5a.
  6. fDetermined by Fisher exact test.
  7. gDetermined by Benjamini–Hochberg–Yekutieli procedure.
  8. GO terms with P-value < 0.001 and FDR ≤ 0.05 were regarded as overrepresented terms.