Table 5 Comparison of miRNA target annotations between the Williams and Heinong44 data sets

Alcohol/Zinc-binding dehydrogenase

Polyubiquitin protein

AGO protein

Alg9-like mannosyltransferase

Plasmamembrane protein

Auxin Response Factor

Aluminium induced protein

Auxin signaling F-BOX protein

Copper/zinc superoxide dismutase

Anion Exchange protein

NADP+

Growth Regulating Factor

Ankyrin repeat containing protein

MtN19-like protein

HD-ZIP Transcription Factor

Ataxin-2 domain containing protein

Serine-type endopeptidase

MYB family Transcription Factor

bHLH family protein

elongation factor

No Apical Meristem protein (NAC Family)

BRE Expressed protein

NSF attachment protein

SBP domain containing protein

BTB/POZ domain containing protein

Autophagy protein

TCP family transcription factor

Calcineurin-like phosphoesterase

embryo-related protein

Nuclear Factor-YA

Cellulose synthase

AP2 transcription factor

Zinc Finger Family protein

Cyclin family protein

heat shock cognate protein

Dynamin family protein

expressed protein

EF-hand containing protein

60 S ribosomal protein

Elongation Factor S-II

Disulfide isomerase

F-box domain containing protein

FAD linked oxidase family protein

Ferredoxin related protein

Auxin inducible transcription factor

Glyoxal oxidase related protein

ribulose-1,5-bisphosphate carboxylase

GTPase-activating protein

Integrase domain containing protein

lectin domain containing protein

LRR containing protein

mRNA capping enzyme

NADP/FAD oxidoreductase

NB-ARC domain containing protein

No Functional Annotation

PAZ domain containing protein

Peptide transporter family protein

Permease family protein

PPR repeat containing protein

Protein tyrosine kinase

Putative methyltransferase

Ras family protein

Ribose 5-phosphate isomerase

Serine protease inhibitor family

Serine-threonine protein kinase

START Domain containing protein

TIR domain containing protein

Transcription factor TFIID

Transferase family protein

Transmembrane protein 14 C

Transporter family protein

UBA domain containing protein

Ubiquitin-protein ligase

Uncharacterized conserved protein

Universal stress protein family