Table 3 Number and frequency of six types of perfect SSR repeat motif in sesame
From: Development and validation of genic-SSR markers in sesame by RNA-seq
SSR motif unit | Repeat motif number and frequency | Most abundant type | |
|---|---|---|---|
SSR ≥15 bp | SSR ≥18 bp | ||
Mono- | 2 (0.29%) | 1 (0.18%) | (A/T)n |
Di- | 3 (0.44%) | 3 (0.54%) | (AG/CT)n |
Tri- | 18 (2.62%) | 18 (3.23%) | (GAA/TTC)n |
Tetra- | 50 (7.28%) | 33 (5.92%) | (ATAC/GTAT)n |
Penta- | 184 (26.78%) | 72 (12.93%) | (AAAAG/CTTTT)n |
Hexa- | 430 (62.59%) | 430 (77.20%) | (GAAAAA/TTTTTC)n |
Total | 687 (100%) | 557 (100%) | Â |