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Table 4 Presence of methionine biosynthesis pathways in the three enrichment cultures as detected using MG-RAST annotations

From: Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community

 

# Pathways complete/partial*

Taxonomic Classification of Pathways

Pathway

DonnaII

ANAS

KB-1

DonnaII

ANAS

KB-1

Methionine synthesis

Methylation pathway (from methylene-tetrahydrofolate and L-homocysteine)

2

3

3

Firm, γ-P

δ-P, Firm, γ-P

BC, δ-P, Firm

betaine-homocysteine S-methyltransferase (BhmT)

0

0

0

   

Uptake of Methionine

Methionine transporter MetT

5

3

2

δ-P, Firm, Fuso, γ-P, Spiro

δ-P, Firm, Fuso

BC, γ-P

ABC Met transporter (3 components)

5/2

4/2

0/1

α-P, β-P, DT, ϵ-P, Firm/Act, γ-P

α-P, ϵ-P, Firm, γ-P/Act, β-P

None/Firm

  1. A full diagram of this system is available through the SEED viewer at (http://seed-viewer.theseed.org/seedviewer.cgi). Taxonomic abbreviations are as in Table3.
  2. *partial – 40% or greater of pathway must be detected.