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Figure 2 | BMC Genomics

Figure 2

From: Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms

Figure 2

Relationship of reference sequence quality scores of putative SNPs and variant frequency ( VF ). High correlation between reference sequence quality scores of putative SNPs and VF was observed in the data set of all putative SNPs (A). When putative SNPs with a Sanger quality score of less than 35 were removed, the correlation disappeared, showing that SNPs with high VF are false-positive SNPs due to sequencing errors in BES Sanger sequences (B).

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BMC Genomics

ISSN: 1471-2164

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