Table 1 Numbers of putative SNPs in relation to read variant frequency ( VF )
VF | No of all SNPs | No of SNPs after removing SNPs with quality score < 35 |
|---|---|---|
1.0 | 13,562 | 255 |
≥ 0.9 | 15,261 | 340 |
≥ 0.8 | 17,434 | 593 |
≥ 0.7 | 19,425 | 1,448 |
≥ 0.6 | 23,330 | 3,959 |
≥ 0.5 | 30,441 | 9,602 |
≥ 0.4 | 40,495 | 17,863 |
≥ 0.3 | 56,195 | 30,687 |
≥ 0.2 | 74,744 | 45,976 |
≥ 0.1 | 81,986 | 52,006 |