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Table 1 Numbers of putative SNPs in relation to read variant frequency ( VF )

From: Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms

VF No of all SNPs No of SNPs after removing SNPs with quality score < 35
1.0 13,562 255
≥ 0.9 15,261 340
≥ 0.8 17,434 593
≥ 0.7 19,425 1,448
≥ 0.6 23,330 3,959
≥ 0.5 30,441 9,602
≥ 0.4 40,495 17,863
≥ 0.3 56,195 30,687
≥ 0.2 74,744 45,976
≥ 0.1 81,986 52,006