SNP

No of SNPs

ADT design score

Average quality score of reference

SNP quality score of reference

SNP mapping quality score

Read mapping depth

Folded variant frequency


Truepositive

2,765

0.974 ± 0.050^{(a)}

54.9 ± 9.4

59.2 ± 6.6

34.3 ± 1.6

18.4 ± 9.3

0.39 ± 0.11

Falsepositive

2,655

0.971 ± 0.053

54.3 ± 10.1

59.1 ± 7.1

33.7 ± 2.0

31.7 ± 18.0

0.34 ± 0.11

P value of t test
 
0.0597

0.0136*

0.4553

<0.0001**

<0.0001**

<0.0001**

 (a) average ± standard deviation; * and ** represent statistical significance at 0.05 and 0.01 probability level, respectively.