Table 2 Summary of newly identified miRNAs
From: Characterization of microRNAs expression during maize seed development
miRNA | Sequence | Length | Abundance | Pre-miRNA | Conservation | |
|---|---|---|---|---|---|---|
(5’-3’) | (nt) | Seed | Leaf | Position1 | ||
zma-miR01 | AAAAAGCCAGAACGATTTATGA | 22 | 15 | - | Intron | |
zma-miR02a | AAGCAAGGATAATGGAGGGGA | 21 | 9 | - | Intron | |
zma-miR02b | AAGCAAGGATAATGGAGGGGA | 21 | 9 | - | Intron | |
zma-miR03 | ACCGATCGGGAGAACCGGAGA | 21 | - | 37 | Overlap | |
zma-miR04 | ACGGTGTTGTGTCAGGGGGGT | 21 | 6 | - | Intergenic | |
zma-miR05 | AGAACCGGAGAGCTAGAGGG | 20 | - | 5 | Overlap | |
zma-miR06 | AGAGGAGATTGAAGGGGCTAG | 21 | 6 | - | Intergenic | |
zma-miR07 | AGAGGATCTATGGTGGAGGAA | 21 | 5 | - | Intron | |
zma-miR08 | AGATATGGTAGAGGGGCCTAA | 21 | 7 | - | Intergenic | O. sativa |
zma-miR09 | AGCTATGAACGTCTGGATGCA | 21 | - | 5 | Intergenic | |
zma-miR10 | AGTGTTTGGTTAGATGGAATAG | 22 | - | 26 | Intergenic | |
zma-miR11 | ATACTAGGAGTGAAGGGATCA | 21 | 8 | - | Intron | |
zma-miR12 | ATATATGTGGGTTGGGATTAAT | 22 | 5 | - | Intron | |
zma-miR13 | ATCACAGGAGGATTGGAGGAG | 21 | 9 | - | Intron | |
zma-miR14a | ATGGAGGGGATTGAGGGGCTA | 21 | - | 9 | Intergenic | |
zma-miR14b | ATGGAGGGGATTGAGGGGCTA | 21 | - | 9 | Intergenic | |
zma-miR14c | ATGGAGGGGATTGAGGGGCTA | 21 | - | 9 | Intergenic | |
zma-miR15 | ATGGTGCATTGACTTGGTCAA | 21 | - | 5 | Intron | |
zma-miR16 | ATTGTAGTGGATTGAGAGGGA | 21 | 8 | - | Intergenic | |
zma-miR17 | ATTTTTGAAGGAAGGAAAGC | 20 | 9 | - | Overlap | S. bicolor |
zma-miR18a | CAAAGAGAATTGAGGGGGCTA | 21 | 10 | 7 | Intergenic | |
zma-miR18b | CAAAGAGAATTGAGGGGGCTA | 21 | - | 7 | Intergenic | |
zma-miR18c | CAAAGAGAATTGAGGGGGCTA | 21 | - | 7 | Intergenic | |
zma-miR18d | CAAAGAGAATTGAGGGGGCTA | 21 | 10 | 7 | Intergenic | |
zma-miR19 | CCAACAGGATATTGGGTATTTC | 22 | 169 | - | Intergenic | O. sativa |
zma-miR20 | CGCAGCGTTGATGAGCCAGCCG | 22 | 57 | 7 | Intergenic | S. bicolor |
zma-miR21 | CGGCTCACCAGCGCTGCACTC | 21 | 6 | - | Intergenic | |
zma-miR22a | CTGAAAAGTGTGGCGCGGTGT | 21 | - | 9 | Intergenic | |
zma-miR22b | CTGAAAAGTGTGGCGCGGTGT | 21 | - | 9 | Intergenic | |
zma-miR23a | GAGACAGACAACATATGTAGAA | 22 | - | 26 | Intron | |
zma-miR23b | GAGACAGACAACATATGTAGAA | 22 | 5 | - | Intron | |
zma-miR24 | GAGCGCAGCGTTGATGAGCCAG | 22 | 5 | - | Intergenic | S. bicolor |
zma-miR25 | GGAGGAGATGGGAGTGGCTAA | 21 | 12 | - | Intergenic | S. bicolor |
zma-miR26a | GTCACAGAAGTTGGGATGCAA | 21 | 5 | - | Intron | S. bicolor |
zma-miR26b | GTCACAGAAGTTGGGATGTAA | 21 | - | 13 | Intron | S. bicolor |
zma-miR27a | GTGATCACGGGAGATTGGAGA | 21 | - | 7 | Intergenic | |
zma-miR27b | GTGATCACGGGAGATTGGAGA | 21 | 48 | - | Intergenic | |
zma-miR28 | TAGAGAGGATTAAAGTGGCTA | 21 | - | 5 | Intergenic | |
zma-miR29 | TAGCTCTTCCTGTTTGGATAT | 21 | 5 | - | Intergenic | S. bicolor |
zma-miR30 | TAGGGATCTATGGAGAGGAA | 20 | 5 | - | Intergenic | |
zma-miR31 | TCAACACACGTGGATTGCGGT | 21 | - | 6 | Intron | |
zma-miR32 | TCACAAGGGGATTGAAGAGGA | 21 | 5 | - | Intron | |
zma-miR33 | TCACTTTGGGATCACAGATAA | 21 | 10 | - | Intron | |
zma-miR34 | TCAGAAAATATGAACTTGAGA | 21 | - | 19 | Intron | |
zma-miR35 | TCATAAGGGGATAAACAACGC | 21 | - | 5 | Intron | |
zma-miR36 | TCGGGGTTAGAGGGGATTGAG | 21 | 6 | - | Intergenic | O. sativa |
zma-miR37 | TGAAAAGCTAGAACGATTTAC | 21 | 5 | - | Intron | |
zma-miR38a | TGAAGAGAATTGAGGGGGCTA | 21 | 17 | - | Intergenic | |
zma-miR38b | TGAAGAGAATTGAGGGGGCTA | 21 | 17 | - | Intron | |
zma-miR39 | TGGACAGGGAAATGAAGGGGA | 21 | 16 | - | Intergenic | |
zma-miR40 | TGGAGGGGATTGAGGGGCATA | 21 | - | 8 | Intergenic | |
zma-miR41 | TTAGATGGGATACATGAGAGG | 21 | - | 5 | Intergenic | |
zma-miR42 | TTAGTAGTTTTAGTTCTTTGC | 21 | 5 | - | Intergenic | A. thaliana |
zma-miR43 | TTTAGTGATCAGCTGGAGGTT | 21 | - | 5 | Intron | S. bicolor |