Table 6 Genes significantly different in skeletal muscle of fish PP diet
Probe name1 | ACC2 | FC ± SEM3 | Identity4 |
|---|---|---|---|
Immune function | Â | Â | Â |
Ssa#STIR12634 | TC70300 | 5.0 ± 1.2 | Vig-2 |
Ssa#STIR00067_2 | U66477 | 3.2 ± 1.3 | Interferon inducible Mx protein |
Ssa#CK894557 | CK894557 | −11.2 ± 1.4 | MHC class Ib antigen |
Ssa#STIR00132_2 | NM_001140254 | −7.4 ± 1.3 | Tumor necrosis alpha-induced protein 2 |
Omy#NP565601 | NP565601 | −6.4 ± 1.4 | T-cell receptor beta |
Ssa#S31982089 | S31982089 | −5.4 ± 1.1 | Platelet-activating factor receptor |
Ssa#STIR12498 | TC70105 | −4.6 ± 1.2 | γ-ip (CXCL10) |
Ssa#S48440415 | S48440415 | −3.4 ± 1.1 | SMAD3 |
Omy#S15331473 | S15331473 | −3.2 ± 1.2 | Interferon-inducible protein Gig2-like |
Ssa#S35544087 | S35544087 | −3.1 ± 1.3 | B-cell CLL/lymphoma 7 protein family member B |
Ssa#STIR13083 | TC70912 | −3.6 ± 1.0 | SAMHD1 |
Omy#S18153399 | S18153399 | −2.4 ± 1.1 | CD80 |
Ssa#KSS5035 | KSS5035 | −2.2 ± 1.2 | Interferon regulatory factor 2-binding protein |
Ssa#STIR00071_3 | DW580947 | −2.3 ± 1.1 | Interferon -induced protein 35 |
Ssa#STIR08451 | TC64790 | −2.2 ± 1.2 | Heat shock protein 47 |
Ssa#S35480903 | S35480903 | −2.0 ± 1.2 | Heat shock protein 30 |
Ssa#STIR29454 | TC95297 | −2.1 ± 1.1 | Beta defensin 1 |
Cell proliferation and apoptosis | Â | Â | Â |
Ssa#S35602638 | S35602638 | 3.7 ± 1.4 | Tripartite motif 39 |
Ssa#TC110067 | TC110067 | 3.5 ± 1.5 | Cell death inducing protein |
Ssa#STIR08668 | TC65039 | 3.1 ± 1.1 | Bh3 interacting domain death agonist |
Ssa#STIR12507 | TC70118 | 3.0 ± 1.3 | Syndecan 4 |
Ssa#STIR02208 | BT049868 | −38.6 ± 1.2 | Caspase 14 |
Ssa#S35559333 | S35559333 | −4.1 ± 1.3 | Ankyrin repeat domain-containing protein 54 |
Omy#TC151190 | TC151190 | −2.9 ± 1.2 | Nucleostemin |
Ssa#S35550715 | S35550715 | −2.8 ± 1.2 | Growth hormone-inducible transmembrane protein |
Ssa#S35585784 | S35585784 | −2.6 ± 1.1 | Caspase-8 |
Ssa#KSS5035 | KSS5035 | −2.4 ± 1.2 | Interferon regulatory factor 2-binding protein 2-B |
Protein metabolism | Â | Â | Â |
Ssa#S35682089 | S35682089 | 4.2 ± 1.3 | Ubiquitin-like protein 1 |
Ssa#STIR17445 | TC77227 | 2.6 ± 1.3 | Acta1 protein |
Ssa#STIR21465 | TC83266 | 2.5 ± 1.2 | Actin-binding |
Ssa#STIR03710 | BT048358 | 2.0 ± 1.2 | Proteasome subunit beta type-9 |
Ssa#STIR00115_4 | BT045917 | 2.0 ± 1.2 | Tropomyosin-1 alpha chain |
Ssa#S32008331 | S32008331 | −3.6 ± 1.7 | 40 S ribosomal protein S16 |
Ssa#CL224Ctg1 | NM_001140473 | −2.8 ± 1.5 | Receptor-interacting serine/threonine-protein kinase 4 |
Omy#CX150460 | CX150460 | −2.7 ± 1.1 | 60 S ribosomal protein L27 |
Omy#S15320960 | S15320960 | −2.6 ± 1.1 | Cathepsin D |
Ssa#TC111443 | TC111443 | −2.5 ± 1.1 | Serine/threonine-protein kinase 35 |
Ssa#FC072705 | FC072705 | −2.3 ± 1.0 | 40 S ribosomal protein S10 |
Ssa#S35583213 | S35583213 | −2.1 ± 1.2 | Serine/threonine-protein kinase PINK1 |
Ssa#S35591236 | S35591236 | −2.1 ± 1.1 | Histidine triad nucleotide-binding protein 3 |
Energy metabolism | Â | Â | Â |
Ssa#STIR39924 | TC110855 | 2.5 ± 1.1 | Cytochrome P450 |
Ssa#S32006874 | S32006874 | 2.2 ± 1.1 | Peroxisomal membrane protein 11 C |
Ssa#KSS5038 | KSS5038 | −4.0 ± 1.3 | Phosphoglycerate kinase |
Ssa#STIR19484 | TC80264 | −3.1 ± 1.3 | Cytochrome c oxidase polypeptide viii |
Ssa#CL200Ctg1 | BT059338 | −2.8 ± 1.3 | L-lactate dehydrogenase B chain |
Ssa#S30282925 | S30282925 | −2.7 ± 1.1 | Peroxisomal 3.2-trans-enoyl-CoA isomerase |
Omy#CX150319 | CX150319 | −2.4 ± 1.2 | Cytochrome c oxidase subunit II |
Ssa#STIR13627 | TC71700 | −2.1 ± 1.2 | Cox18 cytochrome c oxidase |
Ssa#EL698167 | EL698167 | −2.0 ± 1.1 | Malate dehydrogenase 1 |