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Table 2 Statistics for alignment of sequence reads from the 352 kb region associated with the  Grey  allele

From: Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses

  

Breed

  

Lipizzaner

Arabian

Noriker

Icelandic

Knabstrupper

Appaloosa

Quarter Horse

 Grey  genotype

 G/G 

 g/g 

 g/g 

 g/g 

 g/g 

 g/g 

 g/g 

Reads

Av. cover

96

52

7

102

29

10

101

SNPs

Homozygous

101

103

133

422

67

18

100

 

Heterozygous

6

13

6

3

247

47

145

 

Total

107

116

139

425

314

65

245

  1. Data from eight horses representing seven different breeds were compared with the horse genome reference sequence (Sep. 2007 Broad/EquCab2 assembly). SNP calling was performed based on alignments with the horse reference sequence.
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BMC Genomics

ISSN: 1471-2164

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