From: Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
Subspecies/groups | Sample | Count | Unique | Gain | Loss | Total Length |
---|---|---|---|---|---|---|
Btau_4.0 | Â | Â | Â | Â | Â | Â |
Taurine | 447 | 20,302 (45.4) | 1,044 (2.3) | 7,916 (17.7) | 12,386 (27.7) | 814,447,018 (40,117) |
Indicine | 113 | 7,352 (65.1) | 309 (2.7) | 2,595 (23.0) | 4,757 (42.1) | 266,853,291 (36,297) |
Taurine × Indicine | 67 | 3,569 (53.3) | 198 (3.0) | 1,508 (22.5) | 2,061 (30.8) | 159,735,770 (44,756) |
African Breeds | 47 | 3,088 (65.7) | 240 (5.1) | 1,248 (26.6) | 1,840 (39.1) | 129,777,675 (42,026) |
Total | 674 | 34,311 (50.9) | 1,791 (2.7) | 13,267 (19.7) | 21,044 (31.2) | 1,370,813,754 (39,953) |
CNVR | 674 | 3,346 a | 1,316 b | 986 c | 2,051 c | 142,718,107 (42,653) |
UMD3.1 | Â | Â | Â | Â | Â | Â |
Taurine | 434 | 32,445 (74.8) | 1,052 (2.4) | 12,419 (28.6) | 20,026 (46.1) | 1,551,624,380 (47,823) |
Indicine | 97 | 8,715 (89.8) | 327 (3.4) | 3,102 (32.0) | 5,613 (57.9) | 394,966,292 (45,320) |
Taurine × Indicine | 63 | 5,332 (84.6) | 237 (3.8) | 2,268 (36.0) | 3,064 (48.6) | 256,749,182 (48,153) |
African Breeds | 36 | 3,212 (89.2) | 230 (6.4) | 1,197 (33.3) | 2,015 (56.0) | 151,559,764 (47,185) |
Total | 630 | 49,704 (78.9) | 1,846 (2.9) | 18,986 (30.1) | 30,718 (48.8) | 2,354,899,618 (47,378) |
CNVR | 630 | 3,438 a | 1,360 d | 1,054 e | 2,042 e | 146,905,950 (42,730) |