Skip to main content

Table 4 Matching results of TF and TFBS clusters based on sequence information

From: Towards biological characters of interactions between transcription factors and their DNA targets in mammals

BLASTCLUST (parameter) clusters Matching clusters match rate fisher test
TF TFBS TF TFBS TF-TFBS TF cluster odds ratio p value (<)
-L 0.60 -S 60 -L 0.90 -S 60 62 233 39 0.629 123.973 2.2e-16
-L 0.65 -S 65 -L 0.90 -S 65 62 233 40 0.645 133.192 2.2e-16
-L 0.70 -S 70 -L 0.90 -S 70 60 233 40 0.667 141.485 2.2e-16
-L 0.75 -S 75 -L 0.90 -S 75 58 233 39 0.672 139.486 2.2e-16
-L 0.80 -S 80 -L 0.90 -S 80 58 233 40 0.690 151.705 2.2e-16
-L 0.85 -S 85 -L 0.90 -S 85 54 233 37 0.685 136.013 2.2e-16
-L 0.90 -S 90 -L 0.90 -S 90 43 233 27 0.628 79.789 2.2e-16
-L 0.95 -S 95 -L 0.90 -S 95 36 233 25 0.694 88.648 2.2e-16