Table 1 Summary of identified SNPs in orthologous loci
SNP summarya | T. alpinus | T. amoenus | T. ruficaudus | T. striatus | |
|---|---|---|---|---|---|
Fixed | Synonymous | - | 5812 | 5579 | 13984 |
Non-synonymous | - | 1617 | 1616 | 3217 | |
Intron | - | 2286 | 2222 | 2097 | |
UTR | - | 523 | 515 | 447 | |
Total | - | 10238 | 9932 | 19745 | |
Polymorphic | Synonymous | 880 | 2426 | 2625 | 1969 |
Non-synonymous | 512 | 860 | 892 | 633 | |
Intron | 636 | 1052 | 1202 | 339 | |
UTR | 173 | 277 | 284 | 77 | |
Total | 2201 | 4615 | 5003 | 3018 | |
Total difference | Synonymous (%) | 880 (40.0) | 8238 (55.5) | 8204 (54.9) | 15953 (70.1) |
Non-synonymous (%) | 512 (23.2) | 2477 (16.7) | 2508 (16.8) | 3850 (16.9) | |
| Â | Intron (%) | 636 (28.9) | 3338 (22.5) | 3424 (22.9) | 2436 (10.7) |
| Â | UTR (%) | 173 (7.9) | 800 (5.4) | 799 (5.3) | 524 (2.3) |
| Â | Total (%) | 2201 (100) | 14853 (100) | 14935 (100) | 22763 (100) |