Type | 3′ Up | 3′ Exon | 3′ Intron | 3′ Down | Total |
---|
5′ Up | 72 (6) | 1 (0) | 46 (9) | 55 (7) | 174 (22) |
5′ Exon | 0 (0) | 0 (0) | 2 (0) | 0 (0) | 2 (0) |
5′ Intron | 38 (2) | 0 (0) | 38 (10) | 42 (18) | 118 (30) |
5′ Down | 66 (11) | 1 (0) | 43 (4) | 41 (14) | 151 (29) |
Total | 176 (19) | 2 (0) | 129 (23) | 138 (39) | 445 (81) |
- The table indicates the count of potential DNA motifs shared within the genomic regions of the 5′ and 3′ partners. The rows represent the genomic regions for the upstream, exon, intron, and downstream regions of the 5′ partner and the columns of the 3′ partner. Numbers in parentheses indicate the count of shared sequences that significantly match the known DNA motifs in the JASPAR CORE (P<0.00065 and false motif discovery rate < 0.05). Up: upstream; Down: downstream.